Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01860 ATGGACGAAGGCGAGGGAGGGTACGGTGAGACTGGCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCAGTTGCCGACGATGGTTTCTTGGCCGAGGAAGACGATGATTACGAGGATCTTTACAACGACGTCAACGTCGGCGAAGGGTTCCTTCAATCTTTGCGCAAAAATGACGATTCAGCAGTCGTTTCCCGAAACGAAGATGTCGAGGACAAGAAGCCGTCACCGCTGCTGCCGGTCCCAGATGCTGCTGGGGTTTCGATTCCAGGTGTCGGTGGCGGTGGAGAGGGAGTCGGTGGAAGCGGGGTTGTGGAATCTAGGGTTTCCGGGAGAGTTGACGGGTTTCAGAATCAAGGATTCAGAGGGAACGATGTTGGTGCCAAAGGTGGGATTAGGGTTGAATTAGGGCACCAATCTGGTAAATCGAGTGAAATTGAGGAGCAGGGTGGTAATGATGGTGCTGCAGTGCAGGGGATTGGACAGCAACCACATGCTGGAGTTGTTGGAAGTGTGGGAAATGAGGGTATGGCGAGACAAGGTGGTGGTGGTGGTAGTGGTGGTGGTGGAGGAGGGGGAGGAGGAGGAGGAAATGCTATTAGGGTTGGTGGCAATGGTGTTGGGAACAGTGTGGGTGCGGTTAATAGTGTTAGTACTGGAGGAGTTGGAGGTGGTGGTGGTTCTGGTGGTACTATATTGTTTGTTGGTGATTTGCATTGGTGGACCACTGATGCCGAACTGGAAACTGAGCTTAGTAAGTATGGACCTGTTAAGGAGGTGAAGTTTTTTGATGAGAAGGCTAGTGGAAAGTCAAAGGGGTATTGCCAAGTTGAGTTTTTTGACCCTTCTGCTGCAACAACTTGCAAGGAGGGAATGAATGGTCATGTTTTTAATGGGAGACCATGTGTTGTTGCGTTTGCATCTCCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCCATCTGCAGTTACACAACAGGGAAGGAGGGGGCCTTCTGATTCGGGGGCTAAGCCTGGTGGGGGTAATATTTCTACAGGTGGTAATTACCAAGGAGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAACTGGGGAAGAGGGAACAATCCTGGTATGGGGAATAGGGGGCCTGTGAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCATGGTGGAAATGGTTTTGGACAGGGAATTGGTGGTACCCCTCCACTGATGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGTCCCATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGGGGTCCAACCCCTCCATTTTCTGGGATCTTACCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCTGCATTCTTTGGAAGAGGGATGCCAGTTAATGGTATGGGAATGATGCCGACATCAGGTATGGATGGTCCTAATATGGGAATGTGGTCAGATCCGAATATGGGTGGATGGGGTGGGGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCGTCCGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGTTCAGAACGGGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGATGATAGAGATCAAGGATACGAGAGAGATGCACCTAGAGAGAAAGATATGGGCCATGATCCTGAGTGGTCTGAAAGAAGGCATCGAGATGATAGAGAAACTGTCCGAGAACGGTCTCGTGATCGTGACAGGGAAAGATCTCGAGACCGTGATCGTGAACGTTCTCGAGATCGGGACCGAGACCGTGAAAGGGATCACCGTGACAGACACAGAGAAGATAGGGACAGATATGCAGATCATCATAGGTATAGAGATGGGGAAGCAGAGCATGATGATGAGTGGGAGAGGGGACGGTCATCAAGGACACATAGCAAATCGCGGTTATCACAAGAGGAGGAACACCATTCTAGGCCGAGAGATGCTGATTATGGGAAGAGGAGACGGCTCACTTCTGAATAA 2121 0.5059 MDEGEGGYGETGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSAVVSRNEDVEDKKPSPLLPVPDAAGVSIPGVGGGGEGVGGSGVVESRVSGRVDGFQNQGFRGNDVGAKGGIRVELGHQSGKSSEIEEQGGNDGAAVQGIGQQPHAGVVGSVGNEGMARQGGGGGSGGGGGGGGGGGNAIRVGGNGVGNSVGAVNSVSTGGVGGGGGSGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATTCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVTQQGRRGPSDSGAKPGGGNISTGGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLMHPQSMMSQGFDPAFGGPMGRMGSYGGFPGGPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDPEWSERRHRDDRETVRERSRDRDRERSRDRDRERSRDRDRDRERDHRDRHREDRDRYADHHRYRDGEAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01860 706 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 639 IPR034772 -
Phco11g01860 706 MobiDBLite consensus disorder prediction 63 78 - -
Phco11g01860 706 SMART rrm1_1 234 307 IPR000504 GO:0003723
Phco11g01860 706 MobiDBLite consensus disorder prediction 1 22 - -
Phco11g01860 706 MobiDBLite consensus disorder prediction 323 341 - -
Phco11g01860 706 CDD RRM_CFIm68_CFIm59 235 308 - -
Phco11g01860 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Phco11g01860 706 Gene3D - 228 373 IPR012677 -
Phco11g01860 706 MobiDBLite consensus disorder prediction 141 195 - -
Phco11g01860 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 304 IPR000504 GO:0003723
Phco11g01860 706 MobiDBLite consensus disorder prediction 58 86 - -
Phco11g01860 706 SUPERFAMILY RNA-binding domain, RBD 231 318 IPR035979 GO:0003676
Phco11g01860 706 MobiDBLite consensus disorder prediction 502 706 - -
Phco11g01860 706 MobiDBLite consensus disorder prediction 323 399 - -
Phco11g01860 706 MobiDBLite consensus disorder prediction 540 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01860 Phco-Chr11 14933826 14935946 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01860 11 14933826 14935946 Phco11g01860 11 14933826 14935946 ECH