Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01855 ATGCACCATCACCTCCGTCCGGCAATGATGCCGGTGCTCGCGGCGGCGCTCCTCCTCCTCGCAACCCTCTCCCAAGCGCACAACATCACGCGCATCCTCGCGCAGCACCCGGAGTTCTCCACCTTCAACCACTATCTCACCCTCACGCATCTTGCCCCCGAAATCAACGGAAGAACCACCATCACCGTTTGTGCCGTTGACAACGCCGCCATGGACGAACTCCTCTGCAAGCACCCTTCCATCTACACCATCAAAAACATTCTCTCCCTCCATGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACGAACGGCACAGCCCTCGCCGCCACCATGTACCAGGCCACCGGCACCGCCCCGGGCTCCGCTGGCTTCGTCAATATCACCGACCTCCACGGTGGCAAGGTCGCATTCGGCGCCGAAAACAACGATGGAACCCTGACCTCCACCTTCGTGAAATCCGTGGAAGAAATGCCTTACAACATCTCCGTAATCCAGATCAGCAAAATTCTCCCCTCCGCTGCAGCGGAAGCCCCTGCACCCGCTCCTACGCAGCAAAACCTCACCAGCATTATGTCCAAACACGGTTGCAAAGTCTTCGCCGACACTCTTTCTTCCTTTGGCGACGCACTTTCCACCTTCAACGACAACCTCGGCGGTGGATTAACCGTTTTCTGCCCCCTCGACGACGCCTTCAAAGCTTTCCTCCCCAAATTCAAAAACCTAACAGCTTCTGGCAAACTCGCGCTTCTCGAATTCCATGGCGTGCCGGTGTACCAATCCCTTGCCACCCTAAAATCAAACAATGGACTTCAGAACACCTTGGCCACCGACGGAGCTAACAAATTCGACTTCACAGTACAAAACGACGGTGAAGATGTCACTCTCAAGACGAGGCTCACCACGGCGAAGATCACCGACACCATAATCGATGAACAGCCTCTCGCGGTTTTCGCTATCAATAAGGTGCTTCTCCCTAAGGAGTTGTTCAAGGGTCAGGCACTGGCTCCGGCTCCCGCGCCGGAGCCTTCTGCCGCCGACGCTCCTGCGCCGGCGAAGAAGGGGAAGAAGAAGAAAAAGGCTGCTGACGCACCTGCTGCTGATTCGAATTCCGACGCTCCGGCGGACTCCCCCGGGGACGCCGCCGATGACACCGCTGACGATAGTAACGGCGCCGTTATACCTAACGGCAGAATCTTTGGTAATGTTGTTATTGCCTTGGGTTTGGTTTTTGGGTTACCGTTAGTTCTGTGA 1263 0.5637 MHHHLRPAMMPVLAAALLLLATLSQAHNITRILAQHPEFSTFNHYLTLTHLAPEINGRTTITVCAVDNAAMDELLCKHPSIYTIKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSAGFVNITDLHGGKVAFGAENNDGTLTSTFVKSVEEMPYNISVIQISKILPSAAAEAPAPAPTQQNLTSIMSKHGCKVFADTLSSFGDALSTFNDNLGGGLTVFCPLDDAFKAFLPKFKNLTASGKLALLEFHGVPVYQSLATLKSNNGLQNTLATDGANKFDFTVQNDGEDVTLKTRLTTAKITDTIIDEQPLAVFAINKVLLPKELFKGQALAPAPAPEPSAADAPAPAKKGKKKKKAADAPAADSNSDAPADSPGDAADDTADDSNGAVIPNGRIFGNVVIALGLVFGLPLVL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01855 420 Pfam Fasciclin domain 37 114 IPR000782 -
Phco11g01855 420 Pfam Fasciclin domain 201 329 IPR000782 -
Phco11g01855 420 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Phco11g01855 420 SUPERFAMILY FAS1 domain 183 330 IPR036378 -
Phco11g01855 420 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 392 IPR033254 -
Phco11g01855 420 MobiDBLite consensus disorder prediction 339 392 - -
Phco11g01855 420 FunFam Fasciclin-like arabinogalactan protein 2 25 167 - -
Phco11g01855 420 Gene3D FAS1 domain 24 171 IPR036378 -
Phco11g01855 420 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Phco11g01855 420 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Phco11g01855 420 SMART fasc_3 226 330 IPR000782 -
Phco11g01855 420 Gene3D FAS1 domain 172 330 IPR036378 -
Phco11g01855 420 FunFam Fasciclin-like arabinogalactan protein 10 180 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01855 Phco-Chr11 14902461 14903723 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01855 11 14902461 14903723 Phco11g01855 11 14902461 14903723 ECH