Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01800 ATGGAGGAACAAATCCCGTTTAAGAATCTCCATAGCCGAGAGTATTCGGGTCACAAGAAGAAGGTGCACTCTGTGGCGTGGAATTGCATTGGCACTAAACTTGCTTCTGGCTCTGTGGACCAAACTGCGCGAATATGGCATATTGAGCCACATGGGCATGGCAAGGTCAAAGATATTGAACTGAAAGGGCACAGTGATAGTGTGGATCAGCTATGTTGGGACCCTAAGCATGCTGATCTGATTGCAACTGCATCGGGTGACAAGACTGTTCGCTTGTGGGATGCTCGAAGTGGAAAATGTTCACAACAGGCAGAACTTAGTGGGGAGAATATCAACATCACTTACAAACCTGATGGGACTCACGTAGCTGTTGGTAACAGGGATGATGAATTAACAATACTGGATGTTCGGAAGTTCAAACCAATTCATAGGCGCAAGTTCAATTATGAGGTAAACGAGATTGCTTGGAACATGACAGGCGAGATGTTCTTTCTAACAACAGGAAATGGGACTGTGGAAGTACTGTCTTACCCATCTCTTCGACCTCTTGACACTCTCATGGCTCATACAGCCGGTTGTTATTGCATTGCAATTGATCCAGTAGGAAGATATTTTGCTGTTGGAAGTGCCGATTCCCTTGTCAGCCTGTGGAACATCTCAGAGATGCTTTGTGTGCGTACCTTCACAAAGCTAGAGTGGCCCGTCCGGACGATTGGCTTCAATTATACTGGGGATTTAATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATATCAAACGTTGAAACTGGAAGAACAGTGCATCAAATTCCTTGTAGAGCCGCTATGAACAGTGTTGAGTGGAATCCTAAATACAATTTACTTGCTTATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGCATTTTTGGTTTTGAAAATGCTTAG 942 0.4395 MEEQIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHSDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWNISEMLCVRTFTKLEWPVRTIGFNYTGDLIASASEDLFIDISNVETGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01800 313 Pfam Anaphase-promoting complex subunit 4 WD40 domain 232 282 IPR024977 -
Phco11g01800 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 5 310 IPR040132 GO:0006406
Phco11g01800 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Phco11g01800 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Phco11g01800 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Phco11g01800 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Phco11g01800 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Phco11g01800 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Phco11g01800 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Phco11g01800 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Phco11g01800 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Phco11g01800 313 Gene3D - 4 145 IPR015943 GO:0005515
Phco11g01800 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Phco11g01800 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Phco11g01800 313 Gene3D - 146 309 IPR015943 GO:0005515
Phco11g01800 313 CDD WD40 11 295 - -
Phco11g01800 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Phco11g01800 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Phco11g01800 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Phco11g01800 313 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Phco11g01800 313 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Phco11g01800 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Phco11g01800 313 FunFam THO complex subunit 3 175 309 - -
Phco11g01800 313 FunFam THO complex subunit 3 1 165 - -
Phco11g01800 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Phco11g01800 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
Phco11g01800 313 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01800 Phco-Chr11 14359072 14364041 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01800 11 14359072 14364041 Phco11g01800 11 14359072 14364041 ECH