Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01430 ATGGACGGTACTAATAGAGCAGAACCCAGAGAATTTTCAAGTCCTTTGCTTTCCCCAGAATTACAAGCTTATCATGGTAACCATGGGGTTGAGTGTGAGGAAAAGAGGCAGAAAGAAACTTGGTCGGTACCAGCTATTCTGATACTTACCACCCTTGTTGCTGTCTCTGGTTCTTATGTTTTTGGGTCTGCTGCGGGATATTCGTCTCCTGCTCAAAAGGGAATCATGGATGATCTCAATCTCGGCGTGGCTGAGTATTCAATTTTTGGATCAATACTGACTATTGGAGCAATGATTGGGGCCATAATAAGTGGTAGAATAGCAGACTACGCAGGCCGAAGAGCTGCTATGGGCTTCTCCGAAGTATTCTGCATCTTGGGATGGCTTGCAATAGCATTCTCAAAGGTTGGTTGGTTGCTTTATGTTGGAAGATTTTTGGTAGGATGTGGAATAGGCCTTCTATCTTATGTGGTACCGGTTTATGTAGCTGAAATAACACCCAAGAATCTCCGAGGGGGATTCACCACAGTTCATCAGTTAATGATTTGTTGTGGGGTATCATTAACTTATCTTATTGGAGCGTTCTTGAATTGGCGGATTTTGGCTCTAATAGGAACTATTCCTTGTCTGGTACAACTTTTGGGTCTATTCTTCATTCCCGAATCTCCTAGGTGGTTGGCAAAATTTGGTCACTGGGAAAGGAGTGAATCTGTTCTACAGCGTCTTAGAGGAAAGAATGCAGATATTTCTCAAGAGGCCACTGAAATTAGAGATTTTACAGAAGCCCTTAAGAGCGAAACAGAAGCAACTATTTTTGGCTTATTTCAATTGCAGTATCTGAAGTCACTTACTGTAGGAGTTGGTCTGATGATACTGCAACAGTTTGGAGGGGTTAACGGCATTGCTTTTTATGCAAGTTCTATATTCATCTCTGCTGGATTTTCGGGAACTATTGGAATGATAGCAATGGTTGCTGTTCAGATCCCAATGACAGCTTTGGGAGTGCTTTTGATGGATAAATCTGGGAGACGACCACTTCTGCTGATCTCTGCAGCGGGAACATGCTTAGGATGCTTCCTTGCAGCCCTGTCATTCTTCTTACAGGACCTACATAAATGGAAGGAAGGAAGTCCCATTCTGGCACTTGGTGGTGTACTGGTATACACAGGATCATTCTCTCTTGGCATGGGGGGAATCCCCTGGGTTATAATGTCTGAGATATTTCCCATTAATGTGAAGGGCTCTGCAGGAAGTCTTATGACTTTGGTTAGCTGGTTGTGTTCTTGGATTGTATCATATGCTTTTAACTTCCTCATGAGTTGGAGTTCCGCAGGAACTTTCTTCATCTTCTCTACCATATGTGGTTTCACGGTCCTGTTCGTGGCAAAACTAGTGCCAGAGACGAAGGGGCGTGCACTGGAAGAAATTCAAGCATCCCTCAAGAGATGA 1449 0.4362 MDGTNRAEPREFSSPLLSPELQAYHGNHGVECEEKRQKETWSVPAILILTTLVAVSGSYVFGSAAGYSSPAQKGIMDDLNLGVAEYSIFGSILTIGAMIGAIISGRIADYAGRRAAMGFSEVFCILGWLAIAFSKVGWLLYVGRFLVGCGIGLLSYVVPVYVAEITPKNLRGGFTTVHQLMICCGVSLTYLIGAFLNWRILALIGTIPCLVQLLGLFFIPESPRWLAKFGHWERSESVLQRLRGKNADISQEATEIRDFTEALKSETEATIFGLFQLQYLKSLTVGVGLMILQQFGGVNGIAFYASSIFISAGFSGTIGMIAMVAVQIPMTALGVLLMDKSGRRPLLLISAAGTCLGCFLAALSFFLQDLHKWKEGSPILALGGVLVYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSLMTLVSWLCSWIVSYAFNFLMSWSSAGTFFIFSTICGFTVLFVAKLVPETKGRALEEIQASLKR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01430 482 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 469 IPR020846 GO:0022857
Phco11g01430 482 NCBIfam sugar porter family MFS transporter 83 476 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco11g01430 482 ProSitePatterns Sugar transport proteins signature 1. 104 120 IPR005829 GO:0016020|GO:0022857|GO:0055085
Phco11g01430 482 PRINTS Sugar transporter signature 405 417 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco11g01430 482 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco11g01430 482 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco11g01430 482 PRINTS Sugar transporter signature 382 403 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco11g01430 482 FunFam sugar transporter ERD6-like 6 41 480 - -
Phco11g01430 482 CDD MFS_GLUT6_8_Class3_like 48 475 IPR044775 GO:0008643|GO:0051119
Phco11g01430 482 PANTHER - 41 477 - -
Phco11g01430 482 Pfam Sugar (and other) transporter 53 478 IPR005828 GO:0016020|GO:0022857|GO:0055085
Phco11g01430 482 SUPERFAMILY MFS general substrate transporter 36 477 IPR036259 -
Phco11g01430 482 Gene3D MFS general substrate transporter like domains 40 482 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01430 Phco-Chr11 10886664 10890040 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01693 2 47301183 47305200 Phco11g01430 11 10886664 10890040 ECH
Phco11g01430 11 10886664 10890040 Phco11g01430 11 10886664 10890040 ECH