Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01292 ATGGCTGTACCCGTTGAGGAAGCCATTGCTGCTCTATCCACATTCTCGCTCGAGGATGAGCAACCGGAGGTGCAGGGACCTGGAGTGTGGGTGTCAACTGAGAGAGGTGCAACAGAGAGTCCGATAGAGTACAGCGATGTTTCTGCTTACCGACTATCTTTGTCTGAGGACACAAAAGCTCTCAATCAGTTGAGTGTCCTTAGCCAAGAGGGAAAGGAGATGGCATCAGTGCTTTACACTTATCGGAGTTGCGTCAAAGCACTTCCTCAGCTACCTGATTCTATGAAGCAAAGTCAAGCAGACTTGTATTTGGAGACATATCAAGTTCTGGATTTGGAAATGAGTCGTCTGCGTGAAATTCAGCGATGGCAAGCATCAGCTTCCTCAAAATTAGCTGCTGACATGCAACGTTTTTCTAGGCCTGAACGACGCATTAATGGCCCTACAATATCTCATTTGTGGTCTATGTTGAAGTTGCTTGATGTTTTGGTGCAACTTGATCATCTCAAAAATGCTAAGGCAAGCATACCTAATGACTTTTCATGGTATAAAAGGACTTTTACACAAGTCAGTGGTCAGTGGCAAGACACTGATTCAATGAGGGAGGAATTAGATGATTTGCAGATTTTCTTGAGCACAAGATGGGCTATTTTGTTGAATTTGCATGTGGAGATGTTTCGTGTGAACAATGTTGAAGACATTCTTCAAGTTCTTATAGTCTTTGTTGTAGAGTCTTTAGAATTGGACTTTGCACTTCTCTTTCCAGAGCGCCACATTCTCTTGCGTGTTTTGCCTGTTCTTGTTGTCCTAGTGACATCATCAGAGAAAGATAGTGAGTCTCTGTACAAGAGGGTGAAAATCAACAGACTGATGAATATATTTAAGAATGAGGCAGTCATTCCTGCATTTCCAGATCTGCATTTGTCTCCAGCTGCAATATTGAAGGAATTATCAACTTACTTTCCAAAATTTTCTTCCCAAACTCGCCTTCTCACACTTCCTGCACCTCATGAGCTTCCACCTCCCATCCGTGCGGAGCATGATGATTTTGTAATTCGATTTGCTTCTGCAATGAATCAGCTGTTATTGTTAAAGTCAACTGATGGTTCTGATGTTGAATGGAGCAAAGAAGTCAAGGGGAACATGTATGATATGATTGTTGAAGGTTTTCAGCTATTAAGCAAATGGACTGCACGCATATGGGAACAATGTGCTTGGAAATTTTCTCGACCATGCAAAGATGCATCCCCATCATTCTCTGACTATGAAAAGGTAGTAAGATATAATTACAGTGCAGAAGAAAGGAAAGCACTGGTTGAACTTGTGAGCTACATAAAGAGTGTTGGATCTATGATGCAGCGGTGTGATACATTGGTTGCTGATGCTTTATGGGAAACAATACATGCTGAGGTCCAGGATTTTGTCCAAAACACATTAGCTATTATGTTGCGGACTACCTTCAGAAAGAAGAAGGACCTCTCTAGGATTCTTTCAGATATGCGGACCCTTTCAGCTGATTGGATGGCTAATACAAACAAATCAGAATCTGAGTTACAGTCCTCACAGCATGGAGGTGAAGAAAGCAAAGCAAACATATTTTATCCAAGAGCAGTTGCCCCAACTACTGCTCAGGTGCACTGCTTGCAGTTCTTAATATATGAGGTGGTTTCTGGTGGTAACCTTAGGAGGCCAGGTGGACTCTTTGGCAATAGTGGCTCAGAAATCCCAGTTAATGATTTAAAACAGCTGGAGACATTTTTTTACAAGCTTGGTTTTTTCCTTCATATTTTAGACTACTCAGCGACTGTTGCAACATTGACAGATCTTGGTTTCTTATGGTTTAGAGAATTCTATTTAGAGTCTTCACGAGTCATTCAGTTTCCAATTGAGTGTTCTCTTCCCTGGATGTTGGTGGATTGTGTTCTCGAGTCACCAAATTCTGGTCTTCTAGAGAGTGTTCTGATGCCATTTGACATCTACAATGATTCAGCTCAGCAAGCCTTGGTGTTGCTGAAGCAACGATTCCTATATGATGAAATTGAGGCTGAGGTGGATCATTGTTTTGATATATTTGTTACAAAATTGTGTGAAACCATTTTCACATATTACAAAAGTTGGGCAGCAAGCGAATTGCTTGATCCTTCATTCCTCTTTGCTTCAGACAATGCAGAAAAGTATGCTGTGCAACCCATAAGGCTCAATATGCTGCTTAAAATGACTAGAGTGAAGCTTCTTGGAAGGATGATTAATTTGCGAAGTTTGATTACTGAACGGATTAACAAGGTTTTCCGTGAAAATATCGAGTTTCTGTTTGATCGCTTTGAATGCCAGGATCTTTGTGCCATAGTGGAATTAGAGAAGTTGTTGGAAGTCCTAAAACATTCCCATGAACTACTGTCTAGAGATCTTTCTGTAGACTCTTTCAGTCTCATGTTGAATGAGATGCAAGAGAACATCTCCCTTGTATCATTTTCTAGTCGACTGGCCTCGCAGATTTGGTCAGAGATGCAAAGCGATTTTTTGCCAAATTTCATTCTCTGCAATACTACTCAACGTTTTATCAGATCATCAAGGACTGTTCCTGTTCAAAAGCCATCTGTACCCTCTGCTAAGCCTAGTTTCTACTGTGGTACTCAAGATTTGAATTCTGCCCATCAAAGTTTTGCACGACTGCATAGTGGATTCTTTGGAATACCTCACACATTTTCTATTGTTCGACTTCTGGGATCTCGATCATTACCTTGGCTTATTAGAGCTCTTCTTGATCACATATCAAACAAGATTACTTTGCTTGAGCCAATGATTACAGGATTGCAAGAATCTTTGCCAAAGTCAATTGGGCTTCTTCCTTTCGATGGAGGTGTGACAGGTTGTGTGAGACTTGTTAAGGAACATCTTAACTGGGCGACCAAATCGGAGCTAAAAGCTGAGGTTCTTCATGGCATAAAAGAGATTGGAAGTGTATTATATTGGATGGGGCTTCTAGATATTGTGTTGAGAGAAAAGGATTCTATGGATTTCATGCAAACTGCTCCTTGGCTGGGCTTGCTTCCTGGAGGAGATGGTCAAATAGTAACTTCTCAAGATGGTGAACACAGCCCTGTTGTTAGTCTCTTTAAATCAACAGCTGCGGCAATGATTTCATACCCTGGTTGCCCATCACCTACCTCTTTCCATATTATGTCAAAACAAGCAGAAGCAGCAGATCTTTTATACAAGGCTAACTTGAATACTGGAAGTGTGCTGGAGTATGCACTTGCTTTCACTAGTGCTGCTTTGGATAAATATTGTGGTAAATGGAGTGCTGCACCCAAAACAGGCTTCATTGACATAACAATTTCTAAAGATTTCTATCGAATATACAGTGGTCTCCAAATTGGATACTTGGAAGAGTCTGCTCAAGTGCCATCAAATAGTCATGAAAGGCTGGGAGATTCAATTGCTTGGGGGGGCTGCACTATTATTTATTTGCTTGGGCAGCAGCTGCATTTTGAGCTCTTTGACTTTTCGTATCAGATCCTCAATATCGCAGAAGTGGAGGCTATATCTGTTATGCAAACACATAAGAACTCACAATTATCTGTCCAGGGATGGGAAGCCTTATTGGAAGCAATGAAAAAAGCTAGGAGATTAAATAACCATGTATTCTCTATGCTTAAAGCACGTTGCCCCCTTGAAGAAAAGACAGCTTGTGCTATTAAGCAAAGTGGTGCTCCTATACATCGTATAAAATTTGATAACACAGTTTCAGCATTTGAAACACTGCCGCAGAAAGGTGCTTAA 3783 0.4108 MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPIEYSDVSAYRLSLSEDTKALNQLSVLSQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQRWQASASSKLAADMQRFSRPERRINGPTISHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSGQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFVVESLELDFALLFPERHILLRVLPVLVVLVTSSEKDSESLYKRVKINRLMNIFKNEAVIPAFPDLHLSPAAILKELSTYFPKFSSQTRLLTLPAPHELPPPIRAEHDDFVIRFASAMNQLLLLKSTDGSDVEWSKEVKGNMYDMIVEGFQLLSKWTARIWEQCAWKFSRPCKDASPSFSDYEKVVRYNYSAEERKALVELVSYIKSVGSMMQRCDTLVADALWETIHAEVQDFVQNTLAIMLRTTFRKKKDLSRILSDMRTLSADWMANTNKSESELQSSQHGGEESKANIFYPRAVAPTTAQVHCLQFLIYEVVSGGNLRRPGGLFGNSGSEIPVNDLKQLETFFYKLGFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAASELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERINKVFRENIEFLFDRFECQDLCAIVELEKLLEVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSRTVPVQKPSVPSAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHTFSIVRLLGSRSLPWLIRALLDHISNKITLLEPMITGLQESLPKSIGLLPFDGGVTGCVRLVKEHLNWATKSELKAEVLHGIKEIGSVLYWMGLLDIVLREKDSMDFMQTAPWLGLLPGGDGQIVTSQDGEHSPVVSLFKSTAAAMISYPGCPSPTSFHIMSKQAEAADLLYKANLNTGSVLEYALAFTSAALDKYCGKWSAAPKTGFIDITISKDFYRIYSGLQIGYLEESAQVPSNSHERLGDSIAWGGCTIIYLLGQQLHFELFDFSYQILNIAEVEAISVMQTHKNSQLSVQGWEALLEAMKKARRLNNHVFSMLKARCPLEEKTACAIKQSGAPIHRIKFDNTVSAFETLPQKGA 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01292 1260 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED 3 1251 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 Pfam Cytoplasmic Fragile-X interacting family 382 1219 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 PIRSF CYFIP 1 1260 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 Coils Coil 782 802 - -
Phco11g01292 1260 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 606 624 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 673 695 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 731 761 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 257 272 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 134 163 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 419 437 IPR008081 GO:0030833|GO:0031267
Phco11g01292 1260 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 1116 1132 IPR008081 GO:0030833|GO:0031267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01292 11 9642439 9667407 Phco11g01292 11 9642439 9667407 ECH