Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01133 ATGGTGAAGGTGCGCATGAACACCGCCGATGTCGCCGCCGAGGTCAAATGCCTCCGACGCCTCATCGGAATGCGGTGCTCCAACGTCTACGATCTCTCTCCCAAGACCTACGTGTTCAAGCTGATGAACAGCAGTGGAGTTTCGGAATCCGGGGAGAGCGAGAAGGTTCTCCTGCTCATGGAGAGTGGCGTGAGATTGCACTCTACTATTTACATGCGTGACAAGAGCAACACGCCTTCTGGCTTCACTCTCAAATTGAGGAAGCATATTCGGACGAGGAGGCTCGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTCCAATTTGGAGTTGGGGAGAATGCAAACTATGTTATACTGGAGCTGTATGCTCAGGGGAATATCCTCCTCACAGATTCTAATTTTACCGTCATGACTCTGCTGCGGTCTCACAGGGATGATGATAAAGGGCTTGCAATTATGTCACGTCATCGTTATCCTGTTGAAAGTTGTAGAGTTTTTGAGCGAACTACTATTGAAAAGTTGCAGGCATCTCTGGTGTCTTCCAAGGAAGATGGTAATGACGAGACTGTTAAGGTCAATGGAAATGGAAGTAATGCTTCTAATGTTGGAAAAGAGAAGCAGGGAACCCAAAAAGGTGGGAAGTTGTCAACACTGAAAATTGTCCTTGGGGAGGCACTTGGTTATGGACCTGCACTTTCTGAACATATAATATTAGATGCTGGCCTAATCCCTAGTACAAAAGTTCCCAAAGATAAAACGTGGGATAATGCTACTATTCAGGCTTTGGTCCAAGCTGTTGTGAAGTTTGAAGATTGGATGCAGGATATTATTTCAGGTGAAGTAGTCCCTGAAGGATACATTTTGATGCAGAACAGAAGTTTGGGGAACAATTCTTCAATATCTCAGCCTGGAAGTGTTAGCCAGATGTACGATGAGTTCTGCCCCATCTTACTCAACCAATTTAAGTCAAGGGATTATACAAAATTTGAGACATTTGATGCAGCCTTGGATGAGTTCTACAGCAAAATTGAGAGTCAAAGATCAGAACAGCAGCAGAAAGCCAAAGAAAACACAGCTGCTCAGAAACTTAATAAGATTCGCCAGGATCAGGAAAATCGAGTACATGCTTTGAGGAAAGAAGCTGATCAATGTGTTAAGATGGCAGAATTGATAGAATACAACTTGGAAGATGTGGATGCTGCTATAGTAGCTGTTCGTGTAGCTCTAGCTAAAGGTATGAACTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGGAACCCAGTAGCTGGCCTCATTGACAAGCTCCATCTTGAGAGGAACTGCATGACTTTATTGTTAAGCAACAATCTTGATGAGATGGACGATGATGAGAAGACACTCCCTGTGGATAAGGTTGAAGTTGATTTAGCTCTTTCAGCCCATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAGAGCAAACAGGAAAAAACTGTAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAAAGAAAGACTCGCCAACAGCTTAATCAGGAAAAAACTGTTGCCTCAATTTCACATATGCGTAAAGTCCACTGGTTTGAGAAATTTAATTGGTTCATTACCAGTGAGAACTACTTGGTTATCAGTGGACGTGATGCACAGCAAAATGAGCTGATAGTGAAGCGGTATATGTCAAAAGGAGACCTATATGTACATGCTGATCTGCATGGAGCTTCTAGTACTGTTATAAAGAATCACAAGCCTGTGCAGCCAGTTCCACCACTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCACAGCCAGGCATGGGATTCAAAAATTGTTACTAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACAGCTCCTACAGGTGAGTATCTGACAGTAGGGAGTTTCATGATCCGGGGAAAGAAAAATTTTCTTCCTCCACACCCTCTTATCATGGGTTTTGGCCTACTATTTCGCTTGGATGAGAGTTCCTTAGGATCACATTTAAATGAACGAAGAGTGAGAGGAGAGGAAGAAGCAACAGATGATTTTGAAGAAAATGCTCCTCTTGAAGACAGATCTGATTCAGAGTCTGAGAAGGATGTCACTGATATAAAATCTGTCGCTGACCCAGAAATGAATGGTAAATTATCAGCAGATTCACACAAGCCCCTGTCAGAAGATTTTCCCGAAGATTCATCTCAAACAGGTTTGGCTTCTATCAGTGCCAAAAAGGAAATTTCACGTGATTTTCCTGTGAAAGAAACAAGTACATCAAATATGGTTGATAGGGAGATATTATCAGACATTAGCAGAGACGGCTTAGTGGCTGTCACCCCTCAACTTGAGGAACTTATTGACCAAGCTCTGGAACTTGGATCTGTTGCTAAATCAAGTAAGATTTATGGAACTGAGAACTCTCAAATTGATCTAGGCGGTGACAAACATTTTGAACAAAGCAAAGCGGCAGTTAGGGATAAACCTTATATATCAAAAGCTGAGAGACGAAAGCTTAAAAGGGAACAGAAACATGAAGATGCAGATTCAAATGTTGAACATGGAAAGGATGAACTGAAACTGAAAGATATTTCTGAAAATCTACCAGCAAAAGAAGATCAAAATGTGAAAAAAGGTGGTGGTCAAAAAATCAGCCGAGGGCAGAAGGGTAAACTTAAAAAGATAAAGGAGAAATATGCTGGCCAGGACGAGGGAGAAAGGAACATTCGAATGGCATTGTTGGCTTCTTCTGGAAAATCAATCAAGAAGGAAGAGACGTCATCTGAAAATGATGCATTGGACATGGGGGAAATATCTGGCAATGGTCCTGTTGAAGCACCAAAAATATGTTATAAGTGTAAGAAGGCAGGTCACTTGTCTCGGGATTGTAAGGAGAAATCAGATGATCTGGTGCATAGGCATCCAATTGGTGAAGCTGAAGAAAATTCAAAAATGACTGATCTTGACACTTCCCAAGCAGACAGGGTGACAATGGAAGAAGATGATATTCATGAAATAGGAGAAGAAGAAAAAGAAAAACTAAATGACGTGGATTACTTGACTGGGAATCCACTTCCTAATGACATTCTCTTGTATGCTGTTCCTGTCTGTGGTCCTTACAGCGCACTTCAGTCTTACAAATATCGGGTGAAGATAATTCCTGGACCAGCGAAGAAAGGGAAAGCTGCGAAAACTGCAATGAACTTGTTCAGCCACATGTCAGAAGCAACAACCCGGGAGAAGGAGTTGATGAAGGCCTGTACAGATCCTGAGCTAGTTGCTGCAATTATTGGTAATGTGAAAATATCAGCAGCCGGCCTTACTCAATTGAAGCAAAAGCAAAAGAAAGGCAAGAAGAGCAGCAAACAAGCTAGTTAG 3408 0.4263 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHSTIYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGVGENANYVILELYAQGNILLTDSNFTVMTLLRSHRDDDKGLAIMSRHRYPVESCRVFERTTIEKLQASLVSSKEDGNDETVKVNGNGSNASNVGKEKQGTQKGGKLSTLKIVLGEALGYGPALSEHIILDAGLIPSTKVPKDKTWDNATIQALVQAVVKFEDWMQDIISGEVVPEGYILMQNRSLGNNSSISQPGSVSQMYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRSEQQQKAKENTAAQKLNKIRQDQENRVHALRKEADQCVKMAELIEYNLEDVDAAIVAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKKQESKQEKTVTAHEKAFKAAERKTRQQLNQEKTVASISHMRKVHWFEKFNWFITSENYLVISGRDAQQNELIVKRYMSKGDLYVHADLHGASSTVIKNHKPVQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEATDDFEENAPLEDRSDSESEKDVTDIKSVADPEMNGKLSADSHKPLSEDFPEDSSQTGLASISAKKEISRDFPVKETSTSNMVDREILSDISRDGLVAVTPQLEELIDQALELGSVAKSSKIYGTENSQIDLGGDKHFEQSKAAVRDKPYISKAERRKLKREQKHEDADSNVEHGKDELKLKDISENLPAKEDQNVKKGGGQKISRGQKGKLKKIKEKYAGQDEGERNIRMALLASSGKSIKKEETSSENDALDMGEISGNGPVEAPKICYKCKKAGHLSRDCKEKSDDLVHRHPIGEAEENSKMTDLDTSQADRVTMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYSALQSYKYRVKIIPGPAKKGKAAKTAMNLFSHMSEATTREKELMKACTDPELVAAIIGNVKISAAGLTQLKQKQKKGKKSSKQAS 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01133 1135 Pfam Zinc knuckle 959 975 IPR001878 GO:0003676|GO:0008270
Phco11g01133 1135 ProSiteProfiles Zinc finger CCHC-type profile. 960 975 IPR001878 GO:0003676|GO:0008270
Phco11g01133 1135 MobiDBLite consensus disorder prediction 188 213 - -
Phco11g01133 1135 Pfam NFACT protein C-terminal domain 1020 1113 IPR021846 -
Phco11g01133 1135 SUPERFAMILY Retrovirus zinc finger-like domains 956 979 IPR036875 GO:0003676|GO:0008270
Phco11g01133 1135 Coils Coil 363 383 - -
Phco11g01133 1135 MobiDBLite consensus disorder prediction 973 1001 - -
Phco11g01133 1135 MobiDBLite consensus disorder prediction 680 752 - -
Phco11g01133 1135 FunFam nuclear export mediator factor Nemf 6 163 - -
Phco11g01133 1135 MobiDBLite consensus disorder prediction 847 889 - -
Phco11g01133 1135 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Phco11g01133 1135 MobiDBLite consensus disorder prediction 702 718 - -
Phco11g01133 1135 MobiDBLite consensus disorder prediction 930 950 - -
Phco11g01133 1135 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1111 - -
Phco11g01133 1135 MobiDBLite consensus disorder prediction 193 213 - -
Phco11g01133 1135 Pfam NFACT protein RNA binding domain 540 651 IPR008532 -
Phco11g01133 1135 SMART c2hcfinal6 959 975 IPR001878 GO:0003676|GO:0008270
Phco11g01133 1135 MobiDBLite consensus disorder prediction 847 905 - -
Phco11g01133 1135 Gene3D - 955 1008 - -
Phco11g01133 1135 Pfam NFACT N-terminal and middle domains 10 161 - -
Phco11g01133 1135 Pfam NFACT N-terminal and middle domains 225 526 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01133 11 8420750 8431299 Phco11g01133 11 8420750 8431299 ECH