Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00864 ATGTTTCTTATGGCTGCAACTTTGAGACCCGAGACTATGTATGGTCAAACCAATGCCTGGGTGTTACGGATGGAGATGAAATCTCCACTTTTCTTTAATGAGATTATTTATGCACTTTTCACGTTATATATTGTAATTGATATGGGTATTGGGATTGTCACCAGTGTGCCTAATGACATTTCTGATGACTACATGGCTTTGCATGATTTGAAAGCAAAACATGCGTTTAGAGAGAAGTATGGAGTTAAAGATGAGTGGGTGTTGCCATTTGAGAATGTGCCCATCATTGAGATTCCACGGTTTGAAAACAAATGTGCAAAGACGATTTGCTTGCAGATGAAAATAAAAAACAAGAATGATAAGGAAAAGATTGCAGAAGCCAAAAAGCAAACTTACTTGAAAAGGTTCACGGAAGGAATGAAGGTGACAAGAAACGAATCTGTGACTTGCGGGGGCGTTATATGTGGACGGAAACGGCCAGAGCCCTCACTGGAATTTGAATTCCAACGCCGAAGTCAATCGAGAGGTAGTTCCGATCGATTTCCGAAGATGAAGACCGGGTCGCGTTCCAAAGAGTATCAGGAATGGTTCACTTTGGCTGATTCAGACGGAGATGGACGAATCTCTGGGAACGAGGCTACTAAGTTCTTCGCTCTCTCCAACTTATCGCGCTCGCAACTCAAACAGCTTTGGACTCTCGCCGACGTCAAACGACAGGGGTTTTTGGGTTTCCCGGAGTTCGTTACTGCAATGCAGTTGGTTTCGCTGGCGCAAGCAGGTCAAGAACTTAACTCAGACATCCTCAAAACTCAAGTTGATAAGGAAAATATTAAACCTCCTATATTAGAAGGACTCGATGCTTTATTAGCACAAAAGAGTTTAACAATTACTAGCCCGCCCGATGTAAACGGGATTGTTCAGCCTCAAGTGTTTCCAACTAATCGGTGGTTTGGTTCAAAATCTTCAAAGAAATTACCTCTCAATTCAGTTACATCAATCATTGATGGCTTGAAGAAATTATATATCGAGAGGCTAAAGCCGTTGGAAGTTACTTACCGATATAATGATTTTGTGTCTCCATTGTTGACGAACACTGATTTTGATGCCAAACCCATGGTCATGCTTCTTGGTCAATATTCCACAGGAAAAACTACATTTATAAAACATTTGTTAAGATGTGATTATCCGGGAGCACATGTTGGACCAGAGCCTACCACTGATAGATTTGTTGTTGTCATGTCTGGATCTGATGAGAGGAGTATTCCTGGAAATACCATTGCTGTTGATGCTGACATGCCTTTCAGCGGCTTGCCAACATTTGGAGGTTCTTTTTTATCAAAGTTCCAATGTTCTCAAATGCCACATCCTCTGTTAGATGAAATAACACTTGTGGACACTCCTGGAGTCCTATCTGGAGAGAAACAGAGGACTCAACGAAGCTATGATTTCACTGGTGTCGTGTCTTGGTTTGCTGCAAAATGTGATCTTATTCTTCTCCTGTTTGATCCTCATAAACTAGACATCAGTGATGAGTTTAAACGTGTGATCACATCTTTACGTGGTAATGATGACAAGATACGAGTGGTTTTGAATAAGGCAGATCAAGTTGATACTCAACAACTCATGAGAGTTTATGGAGCATTGATGTGGTCATTGGGGAAAGTTCTAAATACTCCCGAAGTTTCACGTGTATACATTGGCTCATTTAATGATAAGCCTATAGATGAAGGATTCGTTACTCCACTAGGACAGGATCTGTTTGAGAAGGAACAAAATGATCTGCTTGCAGATTTGATAGATATTCCAAAGAAGGCATGCGATCGCCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGTATATAATTAGCCACCTTAAGAAGGAGATGCCTGCAATAATGGGTAAAGCCAAGGCTCAACAGAGACTTACTGACAATCTTGAGGAAGAATTTGCAAAGGTTCAAAGAGAGTTTCATCTACCTGGTGGTGATTTTCCCAATGTTGAACACTTCAGAGAAGTATTGAGTAGCTATAGCATCGACAAATTTGAGAAACTAAAGCCAAAAATGATTCAAGCCGTGGATGACATGCTTGGATATGAAATACCAGAGCTTTTAAAGAAATTCAGAAATCCTTATGATTAA 2157 0.4057 MFLMAATLRPETMYGQTNAWVLRMEMKSPLFFNEIIYALFTLYIVIDMGIGIVTSVPNDISDDYMALHDLKAKHAFREKYGVKDEWVLPFENVPIIEIPRFENKCAKTICLQMKIKNKNDKEKIAEAKKQTYLKRFTEGMKVTRNESVTCGGVICGRKRPEPSLEFEFQRRSQSRGSSDRFPKMKTGSRSKEYQEWFTLADSDGDGRISGNEATKFFALSNLSRSQLKQLWTLADVKRQGFLGFPEFVTAMQLVSLAQAGQELNSDILKTQVDKENIKPPILEGLDALLAQKSLTITSPPDVNGIVQPQVFPTNRWFGSKSSKKLPLNSVTSIIDGLKKLYIERLKPLEVTYRYNDFVSPLLTNTDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDRFVVVMSGSDERSIPGNTIAVDADMPFSGLPTFGGSFLSKFQCSQMPHPLLDEITLVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPIDEGFVTPLGQDLFEKEQNDLLADLIDIPKKACDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQRLTDNLEEEFAKVQREFHLPGGDFPNVEHFREVLSSYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00864 718 Pfam Cytoskeletal-regulatory complex EF hand 191 254 IPR000261 GO:0005515
Phco11g00864 718 Gene3D - 22 148 IPR009008 GO:0002161|GO:0006418
Phco11g00864 718 Pfam Domain of unknown function (DUF5600) 608 709 IPR040990 -
Phco11g00864 718 Pfam N-terminal EH-domain containing protein 336 368 IPR031692 -
Phco11g00864 718 Coils Coil 641 661 - -
Phco11g00864 718 CDD EHD 372 616 - -
Phco11g00864 718 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 2 72 IPR009008 GO:0002161|GO:0006418
Phco11g00864 718 SMART eh_3 181 273 IPR000261 GO:0005515
Phco11g00864 718 CDD EH 193 259 IPR000261 GO:0005515
Phco11g00864 718 ProSiteProfiles EH domain profile. 189 267 IPR000261 GO:0005515
Phco11g00864 718 Pfam Dynamin family 373 532 IPR045063 -
Phco11g00864 718 SMART efh_1 192 220 IPR002048 GO:0005509
Phco11g00864 718 SMART efh_1 226 254 IPR002048 GO:0005509
Phco11g00864 718 Gene3D - 373 601 IPR027417 -
Phco11g00864 718 SUPERFAMILY EF-hand 190 260 IPR011992 -
Phco11g00864 718 Coils Coil 110 130 - -
Phco11g00864 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 640 IPR027417 -
Phco11g00864 718 PANTHER EH DOMAIN 189 715 - -
Phco11g00864 718 ProSiteProfiles EF-hand calcium-binding domain profile. 188 223 IPR002048 GO:0005509
Phco11g00864 718 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 367 602 IPR030381 GO:0005525
Phco11g00864 718 Gene3D - 184 282 - -
Phco11g00864 718 Gene3D - 337 709 - -
Phco11g00864 718 FunFam EH domain-containing protein 1 373 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00864 Phco-Chr11 6395264 6401074 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00864 11 6395264 6401074 Phco11g00864 11 6395264 6401074 ECH