Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00573 ATGGAGGGCAAAATATTGGAGTATCAGAATCAGGTGCAAGCTGTGGAAAATTTATCTGCAGGGCTTTCTAGTTTCTCCCTTAGCGACCAGATATGCAATTCCGGTTCCCCTCAGGATGATGAGGTGGGTGGTAGGAGGAGGAATTGCGATACTAAAGAATATTTGGATTCTTTTTCCTCTGATAGTACTGGACGGTGTTCTATAAATGCTTCTAGATTATATCCTGAATTCCCCGAAAAACAATTGGAAAAGCATAACGAAGATATGGAGTCCTCAGCTAATCTTCGGGGAAGGTACTTCTATTACGATACTCCACTTCAGGAAGATACTGGAGTGTGGATACCAGTTTCAGTTCCACCTATGTTGGAAGAGGATCATAAAGAGTGGGCCAAAGGTTTTCAATCAAACGGTGGCTATTTTCCTGATGATGACTTGGGGTGGAATCAATATGTAGGAGATGAGAGGGAATTGACTATGTGGGATGTGCTAACAGAAATGTTACTTGTGGCTCGGGGAAAAGTGACTTCTTTGGCTTCAGGAGATATTCATTTGTGTAATTTTTCGTGGATATCCACCCATGTACTAGAACAAGCTTGGAGAGAGATGGCACAAACTCTTACAGAGGCCAATTTTGGTAATGTGAGGGAACTATTAGAAGCTGAGCCTCCAAAGTGGTTAGCTGATAGTGCTGCTTCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCCATCATGTGCTCTCGACATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAGTGCTCCAAAGGGCGGAGCTTGTTGCCATCAAAATTCCAAGTTTCTGACCCCCAAAGAGTATGTGATGTATGCTGTGTCCGGCTCGAGTCTGTACAGCCTTATTTGATGGATCATGTAAGCAATGCTGCTCAGTTGCCAACCCATGACCTGACGGATCTGAGCACTTTGAGATCTTGGGTTAATTTTCCTTGGGGGCAGTCCATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGGCATATAATCAGATTGGTTTTCTGAAGCCCGAGAAGTCAATTCCAGATGTCATTCTTAGAAAAGCAAAAGGCCTTGCAATTATCACTGTGGTTAAAGTAGGAGTGGTGGTTACGTATAACATTGGAACAGGACTTGTGGTCGCACGAAGGGAAGATGGTTCATGGTCTGCTCCATCTGCTGTGTCCACCTTTGGTGTAGGGTGGGGGGCTCAGGCTGGAGGAGAGTTGACAGACTTCATTATTGTCTTGAGAACAAATGATGCTGTCAAGACATTTAGTGGCAATATGCATATTTCACTTGGAGCTGGTTTGAGTGCTGCAGTAGGCGTTGTTGGTAGATCAGTTGAAGCTGATGTTCGAGCTGGTGATGGTGGTTATGCTGCTTGTTATACCTACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGGAGTATGGTGACTACTCGCGCGCAAGAAAATTCCCGTTTCTATGGCAGCCAGTCTATAGCTGCAACAGACATACTTGGCTCACTGCCTAGGCCACCTGCTGCTGCCATTCTCTATCGTGCACTTACTGATCTCTATTCCACGCTTGATGGATGA 1614 0.4461 MEGKILEYQNQVQAVENLSAGLSSFSLSDQICNSGSPQDDEVGGRRRNCDTKEYLDSFSSDSTGRCSINASRLYPEFPEKQLEKHNEDMESSANLRGRYFYYDTPLQEDTGVWIPVSVPPMLEEDHKEWAKGFQSNGGYFPDDDLGWNQYVGDERELTMWDVLTEMLLVARGKVTSLASGDIHLCNFSWISTHVLEQAWREMAQTLTEANFGNVRELLEAEPPKWLADSAASSCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFQVSDPQRVCDVCCVRLESVQPYLMDHVSNAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIKAYNQIGFLKPEKSIPDVILRKAKGLAIITVVKVGVVVTYNIGTGLVVARREDGSWSAPSAVSTFGVGWGAQAGGELTDFIIVLRTNDAVKTFSGNMHISLGAGLSAAVGVVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSMVTTRAQENSRFYGSQSIAATDILGSLPRPPAAAILYRALTDLYSTLDG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00573 537 PANTHER SH3YL1 PROTEIN 189 535 - -
Phco11g00573 537 Pfam Las17-binding protein actin regulator 406 529 IPR007461 -
Phco11g00573 537 SUPERFAMILY FYVE/PHD zinc finger 223 302 IPR011011 -
Phco11g00573 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 300 IPR013083 -
Phco11g00573 537 CDD SYLF_FYVE 331 531 - -
Phco11g00573 537 Pfam FYVE zinc finger 224 289 IPR000306 GO:0046872
Phco11g00573 537 FunFam Zinc finger family protein 214 296 - -
Phco11g00573 537 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 228 290 IPR017455 -
Phco11g00573 537 SMART fyve_4 220 291 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00573 Phco-Chr11 3970262 3973663 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00573 11 3970262 3973663 Phco11g00573 11 3970262 3973663 ECH