Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00479 ATGCATTTCCTTTCAACTAATCCTCAAGCACAAACAATGACTTTGCACTTCTTTTATTTACTCATCTCCCTTGTTCTTATTAATGGCTACCAAGATGAAGCTACAAATGTACATAACCAAGTTATATCTGTTGGGGCAATCATTGATGTGAATTCTCGCATTGGGAAAGAACAGAAAGTAGCCATGGACATTGCAGCTCGAAGTTACAACAGCACTTCAAAGACCAACAAATTGGCTCTCTATTTCCGGAACTCCACCAAGGATCCCATCCGAGCCATCACTCTTGCTGAAGAGATGATTAATAAGCAAAAGGTGCAAGTGATTATTGGGATGCACAGATGGTCAGAAGCAGCTGTAGTGGCTGAAATAGGAAGCCAAGCTCAAGTTCCTATCATAGCATTTGCAGAACCCACCATAACCCCACCGTTGATGACTAAGCGGTGGCCTTTTTTGGTGAGAATGACTAGAAGTGGTTTATCATATATCAAATGCATTGCAGATATAGTGAAAGCTTTTGGTTGGCAGAGAGTAGTAGCTATCTATGAAGATGATGCATATGGAGGTGATTATGGCATGCTAGCACTACTATCTGAGGCCCTCCAGGATGTGAGTTCATTGATTGATTATCACTTAGTTCTTCCACCTATTTCTTCTCTGCATGATCCAGGAGGGTTTATTCGTGGAAAGCTGCCGAAGTTGATGCAAACCCAATCCCGCGTGTTCATTGTGCTGCAATCTTCATTAGAAATGGCTATTCATTTGTTTAAAGAAGCCTCAAAAATGGGACTCGTGGACAAAGAATCAGCTTGGATACTCCCAGAGAGCATAACAAATTTGCTGGACTCTGTCAACAATGAGTACCAAGATTTTGAGGCTCAATTCCGGAGAACATTTTGGTCTAAGAATGTGGAGGAAGATAACCGCTACCCCGGATTTTATGCATTGCAAGCATATGATAGCATTAAAACTGTGACCCAAGCAATAGACAAAATGACCAGTAGAAACACTACCAGCCCAAAGAATTTACTACGAGAAATACTGCCTAGCAGTTTTCTTGGTTTAAGCGGTCATATTCAATTTGAAGATGGGAAACTCAACCAGACTTCTATTTTAAGTATAGTAAATGTGGCTGGGAAGAGTTACAAGGAACTATGCTTTTGGAGTCAACAATATGGGTTCACCACAAACATCCCTACAGGAAAAGGTGGATATTCTGGTGCTGGTAATACAGAATGTTTCAGTGGTGTTCGGTGGCCTGGGAATGTGAAGCAGTATCCAAAAGGGTGGAACATGCCTACTGCACAAAATCCAATGAAAATTGCAGTTCGCAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGATCAATATGGTAATCCTGCAAATTATGGTGGATTTTGTATTGATATTTTTCTGAGTGTGCTCGGCCATTTGGGGTATTACTTGCCATATAAGTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGACTTATGATGCCGTAGTCGGGGACATGACAATACTAGAGGAAAGACTGCAGTATGTAGATTTTACAGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCATCAAAGTCTAAAGAGTCAGCATGGATGTTCACAAAGCCCTTTACCTGGGAACTGTGGATGGTTACAGGTTCCATTTTGATTTACACAATGTTAGTGGTTTGGTACCTTGAGAGAGAATCCAATCCTGAGTTTCATGGCAATTGGAAGAGCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTTTTCGCTCATAGGGAAAAAATGCATAGCAACTTAACTCGCATGGTGATGGTATCATGGCTCTTGCTAGTTCTGATCCTTAACTCATGCTACACTGCTAGCCTTTCTTCAATGCTCACAGTTAAAAAACTGCAACCAAATGTCACAGATATTGAGTGGTTGAAGAGGAACAACATGAAAATTGGTTGTGATGGCGACTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAAAAGTTCCATCATGAGAACATAATCGATGTTACTGATGAGTACAAGTATGATGATGTTTTTCAAAATAACACCATAGCAGCTGCCTTTCTTGAACTCCCATATGAAAAGGTATTCTTTACTGAATACTGCGATAGATACACGGGTTCCTCCCCCAGAACCAGATTTGGAGGACTGGGCTTTATGTTTCAGAAAGGCTCGCCAGTGGCCAGAGACGTGTCAAAAGCTATATTACATATGTCAGAAAAGGCAGAGCTGAAGAGGTTGGAAGAGAAGTGGTTGATTACCTCCAGCAAGTGCTCCAACATGACCTCCGACACCAACGATACGGAAAGTTTGAAGCTGAGAAGTTTATGGATTCTATATGTCATCTCTGGTGCTACTTCCACCATTTGTCTGCTACTATCAACCATCCACACTCTAGTAAAATCCTGTCAGCAATGCCAACGCGTGGCAGCAGAAGGCAATGACACCCCAAGTCATCATAATGCGTGGGAAAAGATGATTACACATGTAAATCACATTTTTAACAAAAAGATCAATAATTCAAGAGAGACACAGACACAGGTTGTAACTGATTTTTCTTCCAGACGGGGTCACCAGAGCATGAACGATTCTCATGAGCATCATCTGGAATTGGCTTCTCTAGTACCTGAAAATCCAATGCTCCCTTCTCCATCACCAGAGCTACACATGACAACACACACAGACACAGGAATCACCAACAATTCAAAGTAG 2775 0.4123 MHFLSTNPQAQTMTLHFFYLLISLVLINGYQDEATNVHNQVISVGAIIDVNSRIGKEQKVAMDIAARSYNSTSKTNKLALYFRNSTKDPIRAITLAEEMINKQKVQVIIGMHRWSEAAVVAEIGSQAQVPIIAFAEPTITPPLMTKRWPFLVRMTRSGLSYIKCIADIVKAFGWQRVVAIYEDDAYGGDYGMLALLSEALQDVSSLIDYHLVLPPISSLHDPGGFIRGKLPKLMQTQSRVFIVLQSSLEMAIHLFKEASKMGLVDKESAWILPESITNLLDSVNNEYQDFEAQFRRTFWSKNVEEDNRYPGFYALQAYDSIKTVTQAIDKMTSRNTTSPKNLLREILPSSFLGLSGHIQFEDGKLNQTSILSIVNVAGKSYKELCFWSQQYGFTTNIPTGKGGYSGAGNTECFSGVRWPGNVKQYPKGWNMPTAQNPMKIAVRSRTSFSKFVKVDYDQYGNPANYGGFCIDIFLSVLGHLGYYLPYKYYPIDGTYNDLVQLVYNKTYDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPSKSKESAWMFTKPFTWELWMVTGSILIYTMLVVWYLERESNPEFHGNWKSQISTALWFTFSSLFFAHREKMHSNLTRMVMVSWLLLVLILNSCYTASLSSMLTVKKLQPNVTDIEWLKRNNMKIGCDGDSFVRSFLEKVEKFHHENIIDVTDEYKYDDVFQNNTIAAAFLELPYEKVFFTEYCDRYTGSSPRTRFGGLGFMFQKGSPVARDVSKAILHMSEKAELKRLEEKWLITSSKCSNMTSDTNDTESLKLRSLWILYVISGATSTICLLLSTIHTLVKSCQQCQRVAAEGNDTPSHHNAWEKMITHVNHIFNKKINNSRETQTQVVTDFSSRRGHQSMNDSHEHHLELASLVPENPMLPSPSPELHMTTHTDTGITNNSK 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00479 924 Gene3D - 547 688 - -
Phco11g00479 924 FunFam Glutamate receptor 161 308 - -
Phco11g00479 924 Pfam Bacterial extracellular solute-binding proteins, family 3 462 773 IPR001638 -
Phco11g00479 924 PIRSF IGluLR_plant 9 903 IPR017103 -
Phco11g00479 924 MobiDBLite consensus disorder prediction 898 924 - -
Phco11g00479 924 SMART GluR_14 439 775 IPR001320 GO:0015276|GO:0016020
Phco11g00479 924 Pfam Receptor family ligand binding region 60 376 IPR001828 -
Phco11g00479 924 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 855 IPR015683 -
Phco11g00479 924 SUPERFAMILY Periplasmic binding protein-like I 38 429 IPR028082 -
Phco11g00479 924 Gene3D - 36 161 - -
Phco11g00479 924 CDD GluR_Plant 436 773 - -
Phco11g00479 924 Gene3D - 716 780 - -
Phco11g00479 924 Gene3D - 437 546 - -
Phco11g00479 924 Gene3D - 162 436 - -
Phco11g00479 924 FunFam Glutamate receptor 437 548 - -
Phco11g00479 924 CDD PBP1_GABAb_receptor_plant 43 397 IPR044440 -
Phco11g00479 924 Pfam Ligand-gated ion channel 774 805 IPR001320 GO:0015276|GO:0016020
Phco11g00479 924 FunFam Glutamate receptor 547 677 - -
Phco11g00479 924 SUPERFAMILY Periplasmic binding protein-like II 416 773 - -
Phco11g00479 924 MobiDBLite consensus disorder prediction 906 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00479 Phco-Chr11 3263403 3267176 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00479 11 3263403 3267176 Phco11g00479 11 3263403 3267176 ECH