Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00405 ATGAATATAGATTATTTTAAGAGGGAACTGCAGATCGCACTTGACCCATGCCAGAGCAGGGGGATCAATCGAACTTTGCATGCTCTTGGTGTACTCAGTACATTTTTAATCAGAGGCGATCACCGTGTTTGTGTCGTTTCCAATCATTCACCATCGTTACACTGCGCGCTGAAGAGAAAGAAAGAGAGAAACCCTTGCGAAGCCATTGAAGAGATGATTCTTCGCAGAATCGCAGCCGCGAGCAGGTCATACTACACGAGCAGGACAAATAAACCGAACCTGTACTCGAAGATCAGCCCCCTCGGAAATCCCAACACCAGTGTGGTACCAGTACTCGACGATTGGGTGTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCAACGCATCATTCGTGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCCCTCCAGGTATCAGAGTGGATGTACATGAATGGTGTGTGCATATTCTCTCCAACGGAACATGCGGTGCATTTGGATCTGATTGGCAATGTTCAAGGATTCTCTGCTGCAGAAAGCTATTTTGATGCCTTGAGGGATGAAGACAAAACCCATAAGACCTACGGTGCTCTCTTGAATTGCTATGCTCGCCAGCGTGAAACTGATAAGGCCCTCTCTCATTTTCTGAAAATGAAGGAGTTGGGGTTTGCTTCGTCTCCTCTAACCTACAATGTCATTATGTGTCTGTACACAAAGATTGGACAGCACGAGAAGGTTCCTGATGTGCTAAGTGAGATGAAAAAGAACCAGGTCATGCCTGACAATTTCAGCTACAGGATCTGTATAAATTCTTATGGTGTGAGGTCCGATTTTGGTGGAGTGGAAAGAGTGTTGAAAGAAATGGAGACTCAACCACACATTGTGATGGACTGGAACACTTACTCTATCGTGGCCAATTTTTATATAAAAGCTGGGTTTAGAAGTGAGGCAGTTTCTGCCCTAAAGAAATCTGAGGAGAAGCTAGGTAACAAAGATGGCCAGGGTCACAATCATCTCATCTCTCTGTATGCCCAACTTGAACTGAAGAATGAGGTCATGAGAATATGGGATCTGGAGAAAAGTGCTTGCAAGAGGTGCATAAACAGGGATTTCACAACCATGTTAGAATCCCTTGTAAAGCTTGGTGCGTTCGATGAAGCTGAGAAAATACTTACGGAATGGGAATCCTCTGGCAATTGTTATGATTTTGGAATCCCTAGTATTGTAATCATTGGGTATGCACAAAAAAATTTGCATGAGAAAGCCGAGGCCATCCTCCTAGGGTTACAAAATAAGGAAAAGCTCACGACCCCAAACTGTTGGTCGATGGTGGCAGGTGGATATCTTCACAAGGGTGAGACGGAGAAAGCATTGAGGTGCTTTAAAACTGCCCTCTCTATGTACGAGGAAAATAAAGGATGGAAGCCGAACGCAAAGGTGGTTGCAGAACTATTAAGTTGGATTGCTGATAACAGCAGTATTGAAGATGCAGAAGATTTCATCAGATTATTAAGAAATGCTATCCCAGTGAATAGACAAGTATATCATACCCTAATCAAGACTTATATGCGATGTGGTAAAGAAGTGGATGAGCTTCTGGACCACATGGAGAAAGATGGCATCGTCGAAAACAAAGAAACGAAGAAAATAATCAACATCAGGAATGCATGA 1674 0.4397 MNIDYFKRELQIALDPCQSRGINRTLHALGVLSTFLIRGDHRVCVVSNHSPSLHCALKRKKERNPCEAIEEMILRRIAAASRSYYTSRTNKPNLYSKISPLGNPNTSVVPVLDDWVYKGNKVRVAELQRIIRDLRKRSRFSQALQVSEWMYMNGVCIFSPTEHAVHLDLIGNVQGFSAAESYFDALRDEDKTHKTYGALLNCYARQRETDKALSHFLKMKELGFASSPLTYNVIMCLYTKIGQHEKVPDVLSEMKKNQVMPDNFSYRICINSYGVRSDFGGVERVLKEMETQPHIVMDWNTYSIVANFYIKAGFRSEAVSALKKSEEKLGNKDGQGHNHLISLYAQLELKNEVMRIWDLEKSACKRCINRDFTTMLESLVKLGAFDEAEKILTEWESSGNCYDFGIPSIVIIGYAQKNLHEKAEAILLGLQNKEKLTTPNCWSMVAGGYLHKGETEKALRCFKTALSMYEENKGWKPNAKVVAELLSWIADNSSIEDAEDFIRLLRNAIPVNRQVYHTLIKTYMRCGKEVDELLDHMEKDGIVENKETKKIINIRNA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00405 557 Gene3D Tetratricopeptide repeat domain 123 336 IPR011990 GO:0005515
Phco11g00405 557 Pfam PPR repeat family 230 273 IPR002885 -
Phco11g00405 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Phco11g00405 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Phco11g00405 557 Pfam PPR repeat 372 399 IPR002885 -
Phco11g00405 557 Pfam PPR repeat 195 224 IPR002885 -
Phco11g00405 557 ProSiteProfiles TPR repeat profile. 439 472 IPR019734 GO:0005515
Phco11g00405 557 NCBIfam pentatricopeptide repeat 230 262 IPR002885 -
Phco11g00405 557 NCBIfam pentatricopeptide repeat 195 224 IPR002885 -
Phco11g00405 557 PANTHER OS12G0527900 PROTEIN 69 538 - -
Phco11g00405 557 SUPERFAMILY TPR-like 182 484 IPR011990 GO:0005515
Phco11g00405 557 Gene3D Tetratricopeptide repeat domain 358 466 IPR011990 GO:0005515
Phco11g00405 557 Gene3D Tetratricopeptide repeat domain 467 553 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00405 11 2628216 2631950 Phco11g00405 11 2628216 2631950 ECH