Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00280 ATGTTAGATGAAAGAGGGTTATTTGTTATAGGAGATGATGCATTACCCCTGTACATTGCTCCAACCTTCTTGCCTTTAGTTCTGTCCGAGTCTGTATCGTTATGTTCCAATACTTTTCCAAGTGCTTCACTGAGGGCTTTGACAGAGACAAATGACATACTAGAACTGGCCTGCTGGTCCTTTTTTGACATTGATATTGGTGTGCTTTTCGGTGGTGCTTTACTATTCCTCAACACCCTTGTCTTGGAGGTCTTGCGCCTTAAATCTGCCATTTATTGTAGACTAAGATTCAGTAGCAGACTAGGTGAACGCACACAACGCTGCAAGGGCACAGTAATATTAATCAAAATGGGGTTGTGCAAGCTTTCCTTTTTTGCATTGGGTGTGTTAGGGTTGGTGATTGTGGGCGATGTAGTTTATGCTCAAGCTTCAATAGCTGACTATGTGAACGAACATAACGCTGCAAGGTCACAGGTTGGTGTTCCAAATATTGTTTGGGATAATACAGTTGCTGCTTTCGCACAAAACTATGCAAATCAACGCAGAGGTGACTGCAATCTGATCCACTCTGGTGGTGGAGGAAAATATGGGGAGAATCTTGCAGTAAGCACTGGTGACCTAAGTGGGAAAGATGCAGTGAAGTTGTGGGTGGGTGAGAAATCATACTATGACTATAATTCCAACTCTTGTGCTGCCGGCCAACAGTGCGGACACTACACTCAGGTTGTTTGGAAGAACTCTGTACGCGTTGGATGTGCCAAAGTAAGATGCAACAATGGAGGAACCTTCGTCACCTGCAACTATTCTCCTCCTGGCAACTATGTTGGTCAAAGACCCTACTAA 843 0.4413 MLDERGLFVIGDDALPLYIAPTFLPLVLSESVSLCSNTFPSASLRALTETNDILELACWSFFDIDIGVLFGGALLFLNTLVLEVLRLKSAIYCRLRFSSRLGERTQRCKGTVILIKMGLCKLSFFALGVLGLVIVGDVVYAQASIADYVNEHNAARSQVGVPNIVWDNTVAAFAQNYANQRRGDCNLIHSGGGGKYGENLAVSTGDLSGKDAVKLWVGEKSYYDYNSNSCAAGQQCGHYTQVVWKNSVRVGCAKVRCNNGGTFVTCNYSPPGNYVGQRPY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00280 280 Pfam Cysteine-rich secretory protein family 150 268 IPR014044 -
Phco11g00280 280 SMART SCP_3 143 276 IPR014044 -
Phco11g00280 280 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 147 277 IPR001283 -
Phco11g00280 280 ProSitePatterns CRISP family signature 2. 263 274 IPR018244 GO:0005576
Phco11g00280 280 FunFam Putative pathogenesis-related protein 1 142 280 - -
Phco11g00280 280 ProSitePatterns CRISP family signature 1. 237 247 IPR018244 GO:0005576
Phco11g00280 280 Gene3D CAP 144 280 IPR035940 -
Phco11g00280 280 PRINTS Venom allergen 5 signature 210 225 IPR002413 -
Phco11g00280 280 PRINTS Venom allergen 5 signature 235 254 IPR002413 -
Phco11g00280 280 PRINTS Venom allergen 5 signature 164 182 IPR002413 -
Phco11g00280 280 SUPERFAMILY PR-1-like 141 280 IPR035940 -
Phco11g00280 280 PRINTS Allergen V5/Tpx-1 family signature 263 276 IPR001283 -
Phco11g00280 280 PRINTS Allergen V5/Tpx-1 family signature 164 182 IPR001283 -
Phco11g00280 280 PRINTS Allergen V5/Tpx-1 family signature 236 252 IPR001283 -
Phco11g00280 280 PRINTS Allergen V5/Tpx-1 family signature 212 225 IPR001283 -
Phco11g00280 280 CDD CAP_PR-1 146 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00280 Phco-Chr11 1839122 1844176 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00280 11 1839122 1844176 Phco11g00280 11 1839122 1844176 ECH