Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00264 ATGAGCCACGTGGCATCATGGGACTTACACTTTAGGCCCATTGTTAATCGCACGCCTGGTTCCTTTCTTCGTTTCGTCTCCCTCAAATCGCACACGCTTTCGCTGTCTCCCTCTCACTGTTTCTCAGGAGTTTGTGATCTGAGTATAAAGATGGAGCTGAGTAGCATCAAAGATGCATTTGATCGTGTAGCCAAGAAGCAAAAATTATCCTCTTCCAAGTCTCAGGAAGTTGTTGACCAGTTGGGGCGTGAAATTGAGCAGGCGTTGGCAACAATTCATTCACCCCATGACTTCTCTTCTCCTGTTGACCAGAAATCCGTTCTCACAGAACTTAAGTTCAAGATTAATGCTATTGGACCACTTCAACAGCTGGAAGGTTCAAATAAGGAATTGAATGCAAGTCTTAGCAAGTATCAAAAGCTCCTTGAAAAATTGTTAAACCATGACATATCTAAGGCATACAGAAATGTGGACTTTGATACTCGTATTATCAATCAAATCATTGCAAACCACTTTTACCGTCAAGGTTTATTTGATCTTGGAGATAGCATCGTAAATGAGGCTGGAGAGCATGATGCAACTGCACTTAGATCTCAATTTTTGGAAATGCATCAGATTATTGGAGCTATGAGAGAGAAAAACCTTCAGCCTGCTCTGACATGGGTCTCTGCTAATCGAGAGAAACTTGTTCAGATTGGTTCTAATCTTGAGCTTAAGATTCACAGACTGCAGTTTGTAGAGGTCCTACAAAATGGGACACGAGCTGATGCCTTAAAATACGCCCGAACTTATCTTGCTCCTTTTGCTTCCGTCAACAAGGACGAGTTCCCAAAGCTCATGGGTTGCCTCTTGTATGCAGGAAGGCTTGAGAGCTCCCCTTATTCTGAGTTGATGTCCCCAATTCATTGGGAGATGACAACTGAACAGCTCGCACGGCAGTTCTGCACTCTCTTGGGGCAGTCCTATGAGAACCCACTGTGTGTAGCAGTTGCTGCAGGAGTTGAGGGTTTGCCTACCCTGTTAAAGCTGGCAAATGTAATGGCAGCAAAGAAGCAGGAGTGGCTGGAAATGAAACAGTTGCCAGTGCCTGTAGAATTGGGCAAGGAATTTCAGTTTCACTCGATTTTTGTTTGCCCTGTGAGTAGGGATCAAGGAAGTGAAGAGAATCCTCCAATGCTGTTGCCATGCTTACATGTCCTTTGCAAGCAATCAATTATGAAATTATCGAAAAACAGCACCCGAACATTCAAGTGTCCATATTGTCCTGCCGAAGCGACAGTTTCACACTGCAGACAACTGTATTTCTGA 1308 0.4396 MSHVASWDLHFRPIVNRTPGSFLRFVSLKSHTLSLSPSHCFSGVCDLSIKMELSSIKDAFDRVAKKQKLSSSKSQEVVDQLGREIEQALATIHSPHDFSSPVDQKSVLTELKFKINAIGPLQQLEGSNKELNASLSKYQKLLEKLLNHDISKAYRNVDFDTRIINQIIANHFYRQGLFDLGDSIVNEAGEHDATALRSQFLEMHQIIGAMREKNLQPALTWVSANREKLVQIGSNLELKIHRLQFVEVLQNGTRADALKYARTYLAPFASVNKDEFPKLMGCLLYAGRLESSPYSELMSPIHWEMTTEQLARQFCTLLGQSYENPLCVAVAAGVEGLPTLLKLANVMAAKKQEWLEMKQLPVPVELGKEFQFHSIFVCPVSRDQGSEENPPMLLPCLHVLCKQSIMKLSKNSTRTFKCPYCPAEATVSHCRQLYF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00264 435 ProSiteProfiles LIS1 homology (LisH) motif profile. 160 192 IPR006594 GO:0005515
Phco11g00264 435 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 199 256 IPR006595 -
Phco11g00264 435 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 48 434 IPR045098 GO:0004842|GO:0043161
Phco11g00264 435 Pfam RING-type zinc-finger 378 419 IPR027370 -
Phco11g00264 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 434 IPR013083 -
Phco11g00264 435 CDD dRING_Rmd5p-like 376 424 IPR037683 -
Phco11g00264 435 Pfam CTLH/CRA C-terminal to LisH motif domain 199 340 IPR024964 -
Phco11g00264 435 ProSiteProfiles Gid-type RING finger profile. 378 421 IPR044063 GO:0061630
Phco11g00264 435 SMART ctlh 199 256 IPR006595 -
Phco11g00264 435 FunFam Regulator of gluconeogenesis Rmd5 370 434 - -
Phco11g00264 435 SUPERFAMILY RING/U-box 372 433 - -
Phco11g00264 435 SMART ring_2 378 421 IPR001841 -
Phco11g00264 435 Coils Coil 121 148 - -
Phco11g00264 435 SMART toby_final6 252 346 IPR013144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00264 Phco-Chr11 1725941 1730070 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00264 11 1725941 1730070 Phco11g00264 11 1725941 1730070 ECH