Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00256 ATGGCTTCCGCCGTCCTTGCTAACCGGAACGAACCTAATTGGCCACAGCATAGAGGCGGTGGGGCTGGATTCATGGGAAAAGTACCTTTCTCTAACCCTAACCCTAATTCTAATCCTAAATTAGCAAATAGCAAAAGGACCCAATCGGCGTCCGACGATGCTTCCTCTATCAACCGGCGATCGAACGACGCGGCCGTAAGTCACTCTCAATACGTGTGCTTCAGCATCTCTTCGTGCACAAAGAAGGAGCTCAACGACATAAAAAATCGCCTCGTATCGGAGCTTGAACAGGTTCGCAAGTGCAGAAATCGAATCGAGTCCGGCGAGTTACAGCCTGGGCAGAGCTCCAATGGCCACCCGAAGAAACCGTCAAGCAAAAAGGTTTCCGGCAACAAGCGACCCTTACAGTTGAATTCCGTGAAGGAATTGAAACGGTCACATTCGGAAGTTGGGAACACGATGAAGGGTTGTTCGCAGATTTTGCAGAAGCTGATGAAACACAAACATGGGTGGATCTTCAATGTTCCTGTCGATGTTGTTGGAATGGGTCTCCACGATTACTATGATATAATTAAGCAACCTATGGATCTGGGTACTGTGAAGTCGAATCTCTCTAAGAGCGTGTACTCTACGCCTTCGGATTTCGCTGCTGATGTGAGGTTAACTTTCAACAATGCACTGACTTATAACCCCAAGGGTCATGACGTATACACCATGGCGGAGCAGCTTCTGATGAGGTTTGAGGAGCTGTATCGGCCGATGCGTGACAAATCTGAAGGTTGGATCAGACAAGATCAAGATTACGATGAGGAATTGCAGGCCAGTTCTTGGAGCCACGTTGAGCCGGAGAGGGTGAAGAAGAAGGAGAATCCGATCCCTCCTGCGAAATTGCAACAAGAGCCTCCGCAGCCCCCTGCAAGTTCATCAAACCCTCCATTGCTGCAGTCTCCGGTGCGCACGCCATCTCCAATGCGAGCCCCTCCTGTGAAGCCTTTGAAACAACCGAAGCCGAAGGCTAAGGATCCCAACAAGAGGGAGATGAGTCTCGAAGAGAAACACAAGCTTGGATTAGGACTGCAGAGTTTGCCAGCAGAGAAAATGGAACAGGTGGTGCAGATAATAAGGAGGAGGAACGGGCATTTGAAGCAGGATGGGGATGAGATCGAGCTAGATATTGAGGCTGTTGACACAGAGACCCTTTGGGAACTTGATCGATTGGTGACTAATTATAAGAAGATGGTTAGCAAGATTAAGAGGCAGGCATTGATGGGCAATATTAACAACAACAATGAGCAGTCTAGCAGAGGGAATGGGGAATTGGCTGCCAGCGAGAAGATTGATGGGAGTGCAGTTGAGATGAAGAAGTCAAAGAAAGTAGAAGCAGGGGAAGAGGATATTGACATCGGAGACGAGATGCCAATGAGTATGTTCCCCCCTGTGGAGATTGAGAAAGATAAAGATGTTGGTGGAGGGCGTGCCAGTAGTAGTTCTAGTAGCTCAGGCAGTTCAAGCAGTGACTCCTCATCGTCGAGTGATTCGGATTCAGGGAGTTCCTCGGGGAGCGATTCTGAAGCAGACAATGGGCATTTGTAG 1593 0.4896 MASAVLANRNEPNWPQHRGGGAGFMGKVPFSNPNPNSNPKLANSKRTQSASDDASSINRRSNDAAVSHSQYVCFSISSCTKKELNDIKNRLVSELEQVRKCRNRIESGELQPGQSSNGHPKKPSSKKVSGNKRPLQLNSVKELKRSHSEVGNTMKGCSQILQKLMKHKHGWIFNVPVDVVGMGLHDYYDIIKQPMDLGTVKSNLSKSVYSTPSDFAADVRLTFNNALTYNPKGHDVYTMAEQLLMRFEELYRPMRDKSEGWIRQDQDYDEELQASSWSHVEPERVKKKENPIPPAKLQQEPPQPPASSSNPPLLQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKREMSLEEKHKLGLGLQSLPAEKMEQVVQIIRRRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNYKKMVSKIKRQALMGNINNNNEQSSRGNGELAASEKIDGSAVEMKKSKKVEAGEEDIDIGDEMPMSMFPPVEIEKDKDVGGGRASSSSSSSGSSSSDSSSSSDSDSGSSSGSDSEADNGHL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00256 530 ProSiteProfiles NET domain profile. 337 418 IPR027353 -
Phco11g00256 530 MobiDBLite consensus disorder prediction 108 136 - -
Phco11g00256 530 MobiDBLite consensus disorder prediction 273 348 - -
Phco11g00256 530 Coils Coil 84 104 - -
Phco11g00256 530 MobiDBLite consensus disorder prediction 448 464 - -
Phco11g00256 530 SMART bromo_6 146 256 IPR001487 GO:0005515
Phco11g00256 530 ProSiteProfiles Bromodomain profile. 165 237 IPR001487 GO:0005515
Phco11g00256 530 PANTHER OSJNBA0053K19.4 PROTEIN 65 523 - -
Phco11g00256 530 SUPERFAMILY Bromodomain 148 258 IPR036427 GO:0005515
Phco11g00256 530 MobiDBLite consensus disorder prediction 105 137 - -
Phco11g00256 530 CDD Bromo_plant1 153 251 IPR037377 -
Phco11g00256 530 MobiDBLite consensus disorder prediction 491 530 - -
Phco11g00256 530 MobiDBLite consensus disorder prediction 425 439 - -
Phco11g00256 530 MobiDBLite consensus disorder prediction 295 333 - -
Phco11g00256 530 Gene3D - 144 266 IPR036427 GO:0005515
Phco11g00256 530 MobiDBLite consensus disorder prediction 425 530 - -
Phco11g00256 530 MobiDBLite consensus disorder prediction 334 348 - -
Phco11g00256 530 Pfam Bromodomain extra-terminal - transcription regulation 346 408 IPR027353 -
Phco11g00256 530 Gene3D - 340 417 IPR038336 -
Phco11g00256 530 MobiDBLite consensus disorder prediction 30 62 - -
Phco11g00256 530 Pfam Bromodomain 157 241 IPR001487 GO:0005515
Phco11g00256 530 PRINTS Bromodomain signature 168 181 IPR001487 GO:0005515
Phco11g00256 530 PRINTS Bromodomain signature 184 200 IPR001487 GO:0005515
Phco11g00256 530 PRINTS Bromodomain signature 200 218 IPR001487 GO:0005515
Phco11g00256 530 PRINTS Bromodomain signature 218 237 IPR001487 GO:0005515
Phco11g00256 530 MobiDBLite consensus disorder prediction 273 293 - -
Phco11g00256 530 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00256 Phco-Chr11 1675450 1677255 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00256 11 1675450 1677255 Phco11g00256 11 1675450 1677255 ECH