Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g02065 ATGAAGCTCACCGTGAAAACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGTTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAGGTCTCCGAGGATGGCTTTCTTGTTGTAATGCTTAGTAAGAGTAAAACCTTGGGATCTGCTGGCCCTTCATCAAGTCAGCTTGCTAGCAACCCACCTGCAACTGCATCAACCCCAAATTCCCCGTCTCTAGTTCAAACCCGATCTACAAACAACAATGCACCTGCAAGAGATGTCACAACTACAGATGTGACTACGGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCATATTATGGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAGTCGTGCCCTCCGAGCAGCTTACAATAACCCAGAGCGTGCTGTGGACTACCTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTGCCAGCTGCTCCTTACCCAGATAGTCAGACAACTGAAACAGGTGGGGTCACTGCCGGAGCTGTTCCTGGGGTCCCTAACTCATCTCCCTTGAATATGTTTCCACAGGAGGCAATTTCTGGAGTTGGAGCTGGAATTGGGTCGCTTGACTTTCTTAGAAACAATCCCCAGTTTCAAGTATTGAGATCAATGGTGCAATCCAATCCACAAATTCTGCAGCCTGTACTTCAGGAGCTTGGAAAGCAGAATCCTGGTCTCTTAAGAGTAATTCAAGAACATCATGCTGAGTTTCTGCAGTTGATTAATGAACCTATTGAGGGTTCAGAAGGTGATATATTTGATCAACCTGAGCAAGACATGCCTCATGCTATCAATGTGACGCCAGCTGAGCAGGAGGCAATAGGAAGGCTTGAAGCTATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTATTAGAAAATGCCGGAGATTTTGAGGATTAA 1104 0.4466 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGPSSSQLASNPPATASTPNSPSLVQTRSTNNNAPARDVTTTDVTTDTYGQAASNLVAGSNLEQTIQHIMDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPDSQTTETGGVTAGAVPGVPNSSPLNMFPQEAISGVGAGIGSLDFLRNNPQFQVLRSMVQSNPQILQPVLQELGKQNPGLLRVIQEHHAEFLQLINEPIEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g02065 367 FunFam UV excision repair protein RAD23 homolog 137 187 - -
Phco10g02065 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Phco10g02065 367 Pfam UBA/TS-N domain 323 358 IPR015940 -
Phco10g02065 367 Pfam UBA/TS-N domain 144 182 IPR015940 -
Phco10g02065 367 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Phco10g02065 367 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Phco10g02065 367 Gene3D - 314 362 - -
Phco10g02065 367 PRINTS DNA repair protein Rad23 signature 317 333 IPR004806 GO:0006289
Phco10g02065 367 PRINTS DNA repair protein Rad23 signature 349 364 IPR004806 GO:0006289
Phco10g02065 367 PRINTS DNA repair protein Rad23 signature 334 348 IPR004806 GO:0006289
Phco10g02065 367 PRINTS DNA repair protein Rad23 signature 268 290 IPR004806 GO:0006289
Phco10g02065 367 Gene3D - 233 297 IPR036353 GO:0003684|GO:0006289|GO:0043161
Phco10g02065 367 CDD Ubl_Rad23 1 74 - -
Phco10g02065 367 Gene3D - 137 187 - -
Phco10g02065 367 SUPERFAMILY XPC-binding domain 240 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Phco10g02065 367 NCBIfam UV excision repair protein Rad23 1 366 IPR004806 GO:0006289
Phco10g02065 367 SMART ubq_7 1 75 IPR000626 GO:0005515
Phco10g02065 367 Pfam XPC-binding domain 242 297 IPR015360 GO:0003684|GO:0006289|GO:0043161
Phco10g02065 367 MobiDBLite consensus disorder prediction 81 126 - -
Phco10g02065 367 Gene3D - 1 80 - -
Phco10g02065 367 FunFam UV excision repair protein RAD23 1 80 - -
Phco10g02065 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Phco10g02065 367 SMART CBM 240 283 IPR006636 -
Phco10g02065 367 CDD UBA1_Rad23_plant 138 187 - -
Phco10g02065 367 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Phco10g02065 367 FunFam UV excision repair protein RAD23 B 232 298 - -
Phco10g02065 367 SUPERFAMILY UBA-like 141 191 IPR009060 GO:0005515
Phco10g02065 367 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 356 - -
Phco10g02065 367 SUPERFAMILY UBA-like 302 364 IPR009060 GO:0005515
Phco10g02065 367 FunFam UV excision repair protein RAD23 homolog 314 362 - -
Phco10g02065 367 SMART uba_6 323 360 IPR015940 -
Phco10g02065 367 SMART uba_6 144 184 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g02065 Phco-Chr10 42182363 42189616 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g02065 10 42182363 42189616 Phco10g02065 10 42182363 42189616 ECH
Phco10g02065 10 42182363 42189616 Phco1g00037 1 328068 334037 PCT