Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01789 ATGGCACGGGGGAGGATCAGGTCAAGGCTCCGTCGGAGCCATCTTTACACATTTGGTTGCCTGAAGCCGACTACCACTGAGGAGGTGCCTCATCCACTTCAAGGTCCTGGCTACTCGCGAACAGTCTTCTGCAACCAGCCTCAGCTCCATGAAAAAAATTCTCTATTTTACTGCAAGAATGATATATCAACCACCAAGTACAATGTCATCACCTTCATGCCTAAGGCATTGTTTGAACAGTTTCGAAGGGTTGCTAACATATACTTTCTTTTGGCTGCTTGCCTTTCGGCTTCTCCAATTTCACCTTTCAGCCCACTGAGCATGATTGCTCCTCTGGCGTTTGTTGTGGGACTTAGTATGGTGAAGGAGGCATTGGAGGATTTTCGCAGGTTCCTTCAGGATGTCAAAGTTAATCGACGGAAAGTTACTCGCCACATGGGCAGTGGCACTTTTGGCCTAAGATCGTGGCAGAAGATTGTGGTTGGGGATGTGGTAAAAGTAGAAAAGGATCAATTTTTTCCAGCTGACCTGCTTCTCTTGGCGTCAAGTTATGAGGATGGAATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACCAACTTGAAGGTGAAGAGATCTTTGGAGTCTACCTTGTCTCTGGATAACGATGAGGCTTTTAAGGATTTCTGTGGAACAATATATTGTGAAGATCCAAATCCCAATCTTTATACTTTTATTGGGAACTTTGAGTATGAAAATCAGGTTTATCCTCTTGATCCTAGTCAAATTCTCCTCAGAGATTCGAAGCTTAGGAACACTGATCATGTTTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAAAAGAAGATGGATTATATCATATATACTCTTTTCACTGTCCTTATATTGATATCTTTTATTAGTTCGATAGGATTTGTTGCAAAGACCAAATACCAAGCCCCATCGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTTTGATCCTGGGAAAATTGGATTGGCTGGGATGAGCCATCTGATTACAGCACTCATTCTCTATGGATATTTGATTCCTATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCAACCTTCATTGATCAAGACATTCAAATGTATGATGATGAGACTGGAACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACTTGCAACCAGATGGACTTTTTTAAGTGCTCCATTGCCGGTACTGCATATGGTGTTCGTTCCAGTGAGGTTGAACTTGCTGCAGCAAAGCAGATGGCTTGTGATCTTGAGGAGCCGGACTTGGATATGTCTAATTTCCCCATGCCTAAGGATACTAAAGGGCCATGGGAAAATATCACTGAAGATGTAGAATTTGAACTGGGGACTGTTGTTAATTCCAAAGATCATAAAGATCGAAGGACTTCCATAAAGGGATTTGGTTTTGAAGATGATCGCCTTATGAATGGTAACTGGATGAAAGAACCCAATGCGGATGTCCTTTTGATGTTTTTCCGGATATTAGCAATTTGCCATACAGCCATCCCTGAACTAAATGAGGAGACTGACAATTGTACATATGAGGCCGAGTCACCTGATGAAGGGGCTTTTCTAGTAGCAGCTAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTTGTCATTCGTGAAAGATTTGCTGCCTCAGGACAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATTGCGCGAGACGAGGAGGGAAACATCATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGATAGACTGTCTAAGAATGGAAAAATGTATTTGGATGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCCGTGGCCTATAGAGAGCTTGATGACCAAGAGTACTCTGATTGGAATAAGGAGTTTCAGAAGGCCAAAACAGCTGTTGGGCCGGACAGAGAGGCAATGCTTGATCAGGTTTCAGATGTTATGGAAAGGGAGTTGATACTTATTGGCGCTACTGCTGTGGAGGATAAACTACAGAAAGGGGTGCCTCAATGCATTGACAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGTAGTTTGCTTCGACAGGGCATGAGGCAAATCTGTATCACAATGAATTCAGATTCAGCAACTTATGATGCGAAAGAGGTCATCAAAGGAAACATCTTGAATCAAATCACCAATGCCTCGCAAATGATAAAGCTGGACAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGATGTCAAACTCCAATTTTTGGGACTGGCTGTTGGTTGTGCATCTGTTATTTGTTGTCGTGTGTCTCCAAAGCAAAAAGCATTGGTTACAAGGCTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCCATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTAATGGCCAGTGACTTTTCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATTTTCTACTTTGAGGCCTTTGCGGGCTTCTCTGGACAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAAAACTTGTTCTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCTCGTCATCTTCTTCCTTGTCATTATCATCTTCTATGACCAAGCATTCCGCATCAATGGCCAGATCGCAGACATGGCTGCTGTTGGTACCACGATGTTCACTTGCATCATATGGGCTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTCACTTGGATTCAACACCTCTTTGTGTGGGGCAGCATAACCACTTGGTACCTGTTTCTCTTGCTATATGGCATGCTTCCACCAAAATATTGCAAGACTGCCTACAAAATATTGGTGGAGGTTCTTGCTCCCGCTCCTATTTATTGGACAACAACCCTATTAGTAACAATCACATGTGTTCTTCCTTATCTCGCCCACATATCCTTCCAAAGATGTTTTCATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCTAAAGCCAGGCACGAAACGAAGATTGGATTCACGGCAAGAGTGGAAGCAAAAATTAGGCATTTTAGAGGTAAGTTGCAGAAAAAGCAGCAGTCTTCAGTGGGGTCTTTGTCCCCATCATGA 3672 0.4208 MARGRIRSRLRRSHLYTFGCLKPTTTEEVPHPLQGPGYSRTVFCNQPQLHEKNSLFYCKNDISTTKYNVITFMPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMVKEALEDFRRFLQDVKVNRRKVTRHMGSGTFGLRSWQKIVVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLESTLSLDNDEAFKDFCGTIYCEDPNPNLYTFIGNFEYENQVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQAPSWWYLRPDNIEYQFDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFIDQDIQMYDDETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFFKCSIAGTAYGVRSSEVELAAAKQMACDLEEPDLDMSNFPMPKDTKGPWENITEDVEFELGTVVNSKDHKDRRTSIKGFGFEDDRLMNGNWMKEPNADVLLMFFRILAICHTAIPELNEETDNCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFAASGQVVQREYKILNLLDFTSKRKRMSVIARDEEGNIILFCKGADSIIFDRLSKNGKMYLDATTRHLNEYGEAGLRTLAVAYRELDDQEYSDWNKEFQKAKTAVGPDREAMLDQVSDVMERELILIGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMRQICITMNSDSATYDAKEVIKGNILNQITNASQMIKLDKDPHAAFALIIDGKTLTYALEDDVKLQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRINGQIADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITTWYLFLLLYGMLPPKYCKTAYKILVEVLAPAPIYWTTTLLVTITCVLPYLAHISFQRCFHPMDHHIIQEIKYYKKDIEDQHMWTRERSKARHETKIGFTARVEAKIRHFRGKLQKKQQSSVGSLSPS 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01789 1223 Gene3D - 719 919 IPR023214 -
Phco10g01789 1223 Gene3D - 119 288 - -
Phco10g01789 1223 FunFam Phospholipid-transporting ATPase 590 721 - -
Phco10g01789 1223 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1157 IPR032630 -
Phco10g01789 1223 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Phco10g01789 1223 FunFam Phospholipid-transporting ATPase 723 919 - -
Phco10g01789 1223 FunFam Phospholipid-transporting ATPase 118 288 - -
Phco10g01789 1223 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Phco10g01789 1223 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Phco10g01789 1223 NCBIfam phospholipid-translocating P-type ATPase 57 1165 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Phco10g01789 1223 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 41 1176 - -
Phco10g01789 1223 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Phco10g01789 1223 SFLD C1.7: P-type atpase like 404 930 - -
Phco10g01789 1223 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 522 685 IPR023299 GO:0000166
Phco10g01789 1223 Gene3D - 434 469 IPR023299 GO:0000166
Phco10g01789 1223 Gene3D - 591 697 IPR023299 GO:0000166
Phco10g01789 1223 SUPERFAMILY Calcium ATPase, transduction domain A 145 286 IPR008250 -
Phco10g01789 1223 CDD P-type_ATPase_APLT_Dnf-like 60 1039 - -
Phco10g01789 1223 Gene3D - 419 433 IPR023214 -
Phco10g01789 1223 SFLD p-type atpase 404 930 IPR044492 -
Phco10g01789 1223 NCBIfam HAD-IC family P-type ATPase 846 960 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco10g01789 1223 SUPERFAMILY HAD-like 410 923 IPR036412 -
Phco10g01789 1223 Pfam Cation transport ATPase (P-type) 546 650 - -
Phco10g01789 1223 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1154 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01789 Phco-Chr10 40295182 40301004 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01789 10 40295182 40301004 Phco1g00327 1 2434929 2440340 PCT