Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01765 ATGAAGAAGAACCACCACCACGACGACAACGACGCCCAACACAGCAAAGACACTACCGTGGGAATCCTAGATTCTCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTGAAGGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTGGTTCTCCAGATTACTCAAGCTTATCCTCACCAACTTATGTAAGGAGCTCCTCATACAGTGATACTGGCACAAGTGACCACGCATCCGAGAGAGTAGAGAAGGAAGCTCAGAGTACAAGTAAATCATTTGGTACTCCCAATGAGAATAAGTTAAAAGTATCGGCATCCAATGTAGAGAGCCTGTCTGAAGAAGTTCAGAAATCTTCATTGGGTGCTAGAGCTACAGATTCTGCTAGGGTTGTCAAGTTCACTAAGGTGCTTTCTGGGACGATGGTTGTATTAGAGAAATTGCGTGAATTATCTTGGAGTGGTGTTCCAGATTACATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCAACTAATTCAGATAGAAGGGAAGGAGTTTTGAGAAGAAAGCGCCTTGAGTATCTTGACTCTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGGTGTTGATTGTCCAAGAACTGTACCTGAAGTGTCATTCTTTCAGCAACAGCAAGTTCAAAAATCACTGGAGCGTATTCTTTACACATGGGCAATCCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACTTAAAAGGGGCCATAGATAATTGGTCAATGTCTGATTTATCTTCGGATCAAATCTCTAATGTAGAGGCCGACTGCTATTGGTGTCTGTCAAAGTTGCTTGACGGCATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCATATGGAGGAGCAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATTCGAGAGGTACCCTTCCATTTGGTCACACGTCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGAGCAGCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGACGCACCAGGAGCTCGAGATGGTACTTTCTCGTGCGTTTATGTGGCACAGCATGTTCAACAACTGCCCCAGCCATTTAGCTAACTGA 1365 0.433 MKKNHHHDDNDAQHSKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVGSPDYSSLSSPTYVRSSSYSDTGTSDHASERVEKEAQSTSKSFGTPNENKLKVSASNVESLSEEVQKSSLGARATDSARVVKFTKVLSGTMVVLEKLRELSWSGVPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDSVSQYYDIPDTERSDDEINMLRQIGVDCPRTVPEVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLKGAIDNWSMSDLSSDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMEEQGLEFLQFAFRWFNCLLIREVPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSEQLQKLDFQELVMFLQHLPTKNWTHQELEMVLSRAFMWHSMFNNCPSHLAN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01765 454 Gene3D - 135 185 - -
Phco10g01765 454 FunFam TBC1 domain family member 131 183 - -
Phco10g01765 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
Phco10g01765 454 MobiDBLite consensus disorder prediction 53 103 - -
Phco10g01765 454 Pfam Rab-GTPase-TBC domain 161 405 IPR000195 -
Phco10g01765 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 110 427 - -
Phco10g01765 454 SMART tbc_4 154 410 IPR000195 -
Phco10g01765 454 FunFam TBC domain containing protein 187 318 - -
Phco10g01765 454 MobiDBLite consensus disorder prediction 53 78 - -
Phco10g01765 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Phco10g01765 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 136 344 IPR035969 -
Phco10g01765 454 FunFam TBC domain containing protein 319 454 - -
Phco10g01765 454 Gene3D - 319 454 - -
Phco10g01765 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 191 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01765 Phco-Chr10 40156571 40161818 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01765 10 40156571 40161818 Phco10g01765 10 40156571 40161818 ECH
Phco10g01765 10 40156571 40161818 Phco9g00585 9 4239340 4247264 PCT