Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01628 ATGGTTAAGGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTGGTCGCCCACGTCATACTGGTGTGATGGTTGGGATGGGGCAAAAGGATGCATATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATACTAACTCTGAAATATCCCATTGAGCACGGTATTGTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCTGTTCTGCTCACTGAAGCCCCTCTCAATCCAAAGGCTAATCGTGAGAAAATGACCCAAATCATGTTTGAGACCTTCAACACACCTGCCATGTATGTTGCCATCCAGGCTGTTCTGTCTCTCTATGCCAGCGGTCGTACAACTGGTATTGTTCTGGACTCCGGAGATGGTGTCAGCCACACTGTACCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACGTGACCTCACTGATGCCCTGATGAAAATCCTCACTGAGCGTGGTTACTCCTTCACTACCACAGCTGAGAGAGAAATTGTAAGGGATATGAAGGAAAAACTGGCTTATATTGCCCTTGATTATGAACAAGAGCTTGAAACTTCGAAAACTAGTTCAGCTGTTGAAAAGAGCTATGAGCTGCCTGATGGACAGGTCATCACCATTGGTGCCGAGCGCTTCCGTTGTCCTGAAGTTCTCTTCCAGCCATCCATGATTGGAATGGAAGCCGTTGGCATTCATGAGACCACATACAATTCAATTATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGAAACATAGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCGGATAGAATGAGCAAGGAAATCACTGCCCTGGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAGTATAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCGAAGGCAGAGTACGATGAGTCCGGTCCTTCAATTGTACACAGGAAATGCTTTTAA 1083 0.4811 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01628 360 SUPERFAMILY Actin-like ATPase domain 132 360 IPR043129 -
Phco10g01628 360 FunFam Major actin 243 323 - -
Phco10g01628 360 Gene3D - 123 323 - -
Phco10g01628 360 Gene3D - 1 354 - -
Phco10g01628 360 Pfam Actin 2 360 IPR004000 -
Phco10g01628 360 FunFam Actin, muscle 165 256 - -
Phco10g01628 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Phco10g01628 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Phco10g01628 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Phco10g01628 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Phco10g01628 360 FunFam Putative actin-related protein 5 324 352 - -
Phco10g01628 360 SMART actin_3 1 360 IPR004000 -
Phco10g01628 360 FunFam Actin, alpha skeletal muscle 1 161 - -
Phco10g01628 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Phco10g01628 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Phco10g01628 360 PRINTS Actin signature 34 45 IPR004000 -
Phco10g01628 360 PRINTS Actin signature 100 113 IPR004000 -
Phco10g01628 360 PRINTS Actin signature 221 237 IPR004000 -
Phco10g01628 360 PRINTS Actin signature 11 20 IPR004000 -
Phco10g01628 360 PRINTS Actin signature 125 144 IPR004000 -
Phco10g01628 360 PRINTS Actin signature 46 68 IPR004000 -
Phco10g01628 360 PANTHER ACTIN 5 353 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01628 Phco-Chr10 39022025 39024145 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01628 10 39022025 39024145 Phco9g00727 9 5384413 5386070 PCT