Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco10g01624 | ATGGGTCAGACCCTTAGTTGCACGCCCAACCATGACCACGGCCTCTTCACCGCCGTGCAACAGGGTGACCTCCAAATTGTTACCACTCTCTTAGAGGCCGACCCCTCTCTCTGCCACCAAACCACTCTCTACGATCGTCACTCTCCGCTTCATATTGCCGCAGCCAATGCCCAGATCGAGATTCTGTCTAGGCTTTTGGATGGATCTCTTAACCCAGATGTTTTGAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCGTGTGTCGAGAAGCTTCTTCAAGCCGGAGCTAATGTGTTAATGTTTGATACCATTTCCGGGAGAACCTGCTTACACTATGCCGCTTACTACGGCCATTCTTCTTGCCTTAAAGCTATTCTTTCTGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCACGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGTCTGAATGTGTACATATTCTGTTGGACAGTGGAGCCCTTGTTTGTGCTTCAACCGGTGGATATGGCTGTCCTGGGAGTACTCCGCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCGGATCGTCTTCATCGCGATGCATCTGGGCGGATACCATATATGGTTGCTCTGAAACACAAACATGGGGCCTGTGCATCATTGCTGAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCTCCTTTGAAGTTCATCAGTGAGCTTAATCCTGAAGCTAAAGCTTTATTGGAACAGGCGTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGGAGCGCTTACTCTCTTCCATCTCCATCACATTCTGATGGGGCAACTGATGATGTGTCTGAGGTTAGTGAGTCGGAGTTATGTTGCATCTGCTTTGAGCAGGCATGCACAATCGAAGTTCAGAGCTGTGGCCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACAGCCTGTCTCACTCCACCAGTTTGTCCATTCTGTCGAAGCACCATTACAAGACTGGTGGTTGTGAAGACAGAATGCCATGATGAAACAGATCTAGACAGTGTTGACATCAACTGTTCAAAGCTGAGCAAGTCATCAAAGAGATTCAGACACTTGAATGACAGTGGTAGCAGCAGCTTCAAGGGCCTATCGAGTGTTAGTTCATTCGGGAAGTTGGGTGGCCGCAGCTCTGGAAGGATTGCTGCTGAGTGGGTCGATAAACAGTGA | 1335 | 0.4951 | MGQTLSCTPNHDHGLFTAVQQGDLQIVTTLLEADPSLCHQTTLYDRHSPLHIAAANAQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLQAGANVLMFDTISGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLHRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSAYSLPSPSHSDGATDDVSEVSESELCCICFEQACTIEVQSCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTECHDETDLDSVDINCSKLSKSSKRFRHLNDSGSSSFKGLSSVSSFGKLGGRSSGRIAAEWVDKQ | 444 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco10g01624 | 444 | Gene3D | - | 6 | 144 | IPR036770 | - | |
| Phco10g01624 | 444 | SMART | ANK_2a | 112 | 142 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | SMART | ANK_2a | 45 | 74 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | SMART | ANK_2a | 227 | 256 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | SMART | ANK_2a | 10 | 39 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | SMART | ANK_2a | 194 | 223 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | SMART | ANK_2a | 157 | 186 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | SMART | ANK_2a | 78 | 107 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat profile. | 78 | 110 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat profile. | 157 | 189 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat region circular profile. | 157 | 182 | - | - | |
| Phco10g01624 | 444 | Pfam | Ankyrin repeat | 195 | 225 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | SUPERFAMILY | Ankyrin repeat | 9 | 250 | IPR036770 | - | |
| Phco10g01624 | 444 | SUPERFAMILY | RING/U-box | 315 | 375 | - | - | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat region circular profile. | 45 | 77 | - | - | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat region circular profile. | 78 | 105 | - | - | |
| Phco10g01624 | 444 | PANTHER | ROLLING PEBBLES, ISOFORM B | 152 | 247 | - | - | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat profile. | 45 | 77 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat profile. | 194 | 226 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | ProSiteProfiles | Ankyrin repeat region circular profile. | 194 | 220 | - | - | |
| Phco10g01624 | 444 | Gene3D | - | 198 | 251 | IPR036770 | - | |
| Phco10g01624 | 444 | Pfam | Ankyrin repeats (3 copies) | 15 | 109 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | Pfam | Ankyrin repeats (3 copies) | 112 | 183 | IPR002110 | GO:0005515 | |
| Phco10g01624 | 444 | Gene3D | - | 145 | 197 | IPR036770 | - | |
| Phco10g01624 | 444 | ProSiteProfiles | Zinc finger RING-type profile. | 320 | 369 | IPR001841 | - | |
| Phco10g01624 | 444 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 378 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco10g01624 | Phco-Chr10 | 38982115 | 38984705 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco10g01624 | 10 | 38982115 | 38984705 | Phco10g01624 | 10 | 38982115 | 38984705 | ECH | |
| Phco10g01624 | 10 | 38982115 | 38984705 | Phco9g00729 | 9 | 5401361 | 5403826 | PCT |