Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01620 ATGGCGTCCCAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGATCTCTGCAAGAACCCCGTTGATGGATTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGCGTCACTGTAATTGGGCCTCCCGATACTCTCTATGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCACCATCAGTGAAATTTACCTCTGAGATATGGCATCCCAATGTTTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGATCCGAATGGTTATGAGCTTGCAAGTGAGCGTTGGACACCTGTTCATACAGTAGAAAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGAAAGAGTGGAGAGACAGGAGAGATGAATTCAAGAAAAAAGTTAGCCGGTGCGTGCGAAAGTCACAAGAAATGTTGTGA 501 0.4451 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTVIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01620 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 163 - -
Phco10g01620 166 SMART ubc_7 7 164 - -
Phco10g01620 166 CDD UBCc 17 159 IPR000608 -
Phco10g01620 166 FunFam ubiquitin-conjugating enzyme E2 7 2 166 - -
Phco10g01620 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Phco10g01620 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Phco10g01620 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Phco10g01620 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Phco10g01620 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01620 Phco-Chr10 38935042 38938689 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01620 10 38935042 38938689 Phco10g01620 10 38935042 38938689 ECH
Phco10g01620 10 38935042 38938689 Phco9g00739 9 5487506 5491738 PCT