Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01525 ATGCGAATCCTCCTCCTCCTCTCCCTTGCCACTCTCCTCCTCTTCTCCTCCTTCTCTCCCACCCTCTGCGCCAGCCCCGCCGCCGCGGACGACGACAATGAAGACCTCAGCTTCCTCGAAGACGAGACCTCTGCGCCGGATCACCACCACCACGACTTCGCCGATGACGCCAATTACGGCGACTTCGACGACTTCGAGGACGACTCTGAGGCCTACAAGCAGCCTGAGGTTGACGAGAAGGACGTTGCCGTTTTGAAGGACAAGAATTTCAGCGACGTTGTCAAGAACAACCGCTTCGTCATGGTTGAATTTTACGCGCCGTGGTGCGGCCACTGCCAGGCCCTCGCGCCGGAGTACGCCGCCGCCGCCACCGAGCTCAAGGGCGAAGATGTCATTTTGGCGAAGGTCGATGCCACGGAGGAGAATGAATTGGGGCAGCAGTACGATGTGCAGGGTTTTCCCACTATCTACTTCTTCATTGATGGCATTCACAAGCCTTATAATGGGCAAAGGACCAAGGAGGCTATAGTGACGTGGATTAAGAAGAAGATTGGACCTGGTATATACAACTTGACTACATTGGAGGATGCTCAACGTATTTTGACCAGTGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTGCCGCTTCAAGAATTGAGGATGATGTCAATTTTTATCAGACTGTGAATTCCGACGTGGCAAAGCTTTTCCATATTGACCCCGATGTTAAGCGCCCAGCTTTGATCCTCGTCAAGAAGGAGGAAGAAAAACTTAAGCACTTTGATGGCAAATTTGAGAAGTCTGCAATAGCGGACTTTGTCTTTTCCAACAAGCTTCCTCTGGTAACAATTTTTACAAGAGAAAGTGCCCCAGCAGTCTTTGAAAATTCGATCAAGAAACAGTTGTTGCTGTTTGCAACTTCAAATGATTCCGAGAAGTTCATCCCAGTATTTCAAGAAGCAGCAAAATCTTTCAATGGAAAGTTGATATTTGTATATGTGGACCTGGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGGATGCTCCAAAAGTACTTGCATACACTGGGAATGATGATGGAAGAAAATTTCTGCTTGACGGAGAGGTGACTGCTGACAGAATTAAGGCATTTGGGGAAGATTTTCTCGATGACAAGCTAAAACCATTTTACAAGTCAGATCCAATTCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGGATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAATCACTGGAGCCAATTTATGACAAGCTTGCAAAACATCTTCGTAGTATTGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCACCCCAGGGCCAAGCCCGATGGATTCCCCACTCTTCTCTTCTTCCCTGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTAATGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCACATTCAAGCTCCAGAAACCAACCTCAACAACTCCATCCGAGAGCTCTGGGGCCAAGGCGAGCTCTGATGCCAAAGAGAGCCAGAGTAGCAATAGTGATGTGAAGGATGAATTATGA 1701 0.4674 MRILLLLSLATLLLFSSFSPTLCASPAAADDDNEDLSFLEDETSAPDHHHHDFADDANYGDFDDFEDDSEAYKQPEVDEKDVAVLKDKNFSDVVKNNRFVMVEFYAPWCGHCQALAPEYAAAATELKGEDVILAKVDATEENELGQQYDVQGFPTIYFFIDGIHKPYNGQRTKEAIVTWIKKKIGPGIYNLTTLEDAQRILTSETKVVLGFLNSLVGPESEELAAASRIEDDVNFYQTVNSDVAKLFHIDPDVKRPALILVKKEEEKLKHFDGKFEKSAIADFVFSNKLPLVTIFTRESAPAVFENSIKKQLLLFATSNDSEKFIPVFQEAAKSFNGKLIFVYVDLDNEDVGKPVSEYFGISGDAPKVLAYTGNDDGRKFLLDGEVTADRIKAFGEDFLDDKLKPFYKSDPIPESNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQSLEPIYDKLAKHLRSIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRNVVAFYKFLKKHASITFKLQKPTSTTPSESSGAKASSDAKESQSSNSDVKDEL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01525 566 Gene3D Glutaredoxin 187 285 - -
Phco10g01525 566 SUPERFAMILY Thioredoxin-like 416 527 IPR036249 -
Phco10g01525 566 NCBIfam protein disulfide-isomerase domain 85 183 IPR005788 GO:0003756
Phco10g01525 566 SUPERFAMILY Thioredoxin-like 189 299 IPR036249 -
Phco10g01525 566 SUPERFAMILY Thioredoxin-like 287 417 IPR036249 -
Phco10g01525 566 CDD PDI_b'_family 305 399 - -
Phco10g01525 566 NCBIfam protein disulfide-isomerase 80 566 IPR005792 GO:0003756
Phco10g01525 566 FunFam Protein disulfide-isomerase 71 183 - -
Phco10g01525 566 ProSiteProfiles Thioredoxin domain profile. 63 185 IPR013766 -
Phco10g01525 566 FunFam protein disulfide-isomerase A2 184 288 - -
Phco10g01525 566 Pfam Thioredoxin-like domain 223 394 - -
Phco10g01525 566 Gene3D Glutaredoxin 66 186 - -
Phco10g01525 566 Pfam Thioredoxin 82 182 IPR013766 -
Phco10g01525 566 Pfam Thioredoxin 420 505 IPR013766 -
Phco10g01525 566 PANTHER PROTEIN DISULFIDE ISOMERASE 4 553 - -
Phco10g01525 566 PRINTS Thioredoxin family signature 108 117 - -
Phco10g01525 566 PRINTS Thioredoxin family signature 100 108 - -
Phco10g01525 566 PRINTS Thioredoxin family signature 149 160 - -
Phco10g01525 566 ProSitePatterns Thioredoxin family active site. 101 119 IPR017937 -
Phco10g01525 566 FunFam Protein disulfide-isomerase 289 414 - -
Phco10g01525 566 CDD PDI_a_family 84 180 - -
Phco10g01525 566 Gene3D Glutaredoxin 286 414 - -
Phco10g01525 566 ProSitePatterns Thioredoxin family active site. 440 458 IPR017937 -
Phco10g01525 566 CDD PDI_b_family 188 287 - -
Phco10g01525 566 Gene3D Glutaredoxin 415 529 - -
Phco10g01525 566 MobiDBLite consensus disorder prediction 533 566 - -
Phco10g01525 566 SUPERFAMILY Thioredoxin-like 75 185 IPR036249 -
Phco10g01525 566 FunFam Protein disulfide-isomerase 415 528 - -
Phco10g01525 566 ProSiteProfiles Thioredoxin domain profile. 397 527 IPR013766 -
Phco10g01525 566 MobiDBLite consensus disorder prediction 533 556 - -
Phco10g01525 566 CDD PDI_a_PDI_a'_C 420 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01525 Phco-Chr10 38038760 38042699 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01525 10 38038760 38042699 Phco10g01525 10 38038760 38042699 ECH
Phco10g01525 10 38038760 38042699 Phco9g00868 9 6746598 6750109 PCT