Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01434 ATGCAGACTCTTACGCCCCCCACTTCCAACGCGCTTAACCTCAACCACGTTCTTCGTACGCGCCGCCTCGTACCAACCCGAATCTCCGTCAAATGCGCTTACGCGTTCGAACCGGCGAGCTACGGGGTCGGCTCCAGCCGAGCCGATTGGCAGAGTTCTTGCGCCATCTTAGCCAGCAAGGTTGTTTCTCAGGAACAATCCTCCTCCGCTGACAAGAACGGTGGCACTGCCGACCACGTCGCCGCCGTTAATGGCCATAAGGCAGCCGTCAGCGACTTCCAACTCGTTCCCATCGGTAACCTCGCTGAGGCCAACAACAAGCCGCTCCCGCCGAAGCCGCTCACAATCTCTGACTTCTCTCCGGCGCCGATGCACGGCTCGAAGCTCAGAGTCGCGTACCAGGGCGTTCCCGGCGCGTACTCCGAGGCTGCAGCCGGGAAAGCCTATCCGAACTGCGAGGCCATCCCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCCGTAGAACTTTGGATCGCCGATCGAGCGGTTTTACCGGTGGAAAACTCCCTCGGCGGTTCGATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCGGTCCACCACTGCCTCCTCGCTCTCCCCGGCGTTCGCAAGGACTTCCTCACGCGCGTAATCTCGCATCCGCAGGCGCTCTCGCAGTGCGAGCACACGCTCACCAAGCTCGGCCTCAACGTGGCGCGCGAGGCCGTCGACGATACCGCCGGCGCCGCGGAGTTCGTTGCCACTAACAACCTCCGCGACACCGCCGCTATCGCGAGCGCACGCGCGGCGGAGCTCTACGGATTGAACGTGATGGCGGACGGCATCCAGGACGATCCGAGCAACGTGACGCGCTTCGTGATGCTGGCCAGAGAGCCCATCATTCCCCGCACCGACCGTCCTTTCAAGACCAGCATTGTTTTCGCGCACGACAAAGGCACCTCCGTGCTTTTCAAAGTGCTTTCCGCCTTTGCTTTTCGCAACATCAGCTTGACGAAGATCGAGTCTCGGCCGCACCGCAACCGTCCGATTCGGCTTGTCGATGACGCAAACGTGGGAACCGCGAAGCACTTCGAGTACTTGTTTTACGTTGATTTCGAGGCTTCTATGGCTGAGGTGAGGGCTCAGAACGCGCTTGCAGAGGTTCAGGAATTCACCTCCTTCTTGCGAGTGTTGGGAAGTTACCCCATGGACATGACTCCCTGGTCCCCTTCCTCTCCCCCACATTGA 1278 0.6111 MQTLTPPTSNALNLNHVLRTRRLVPTRISVKCAYAFEPASYGVGSSRADWQSSCAILASKVVSQEQSSSADKNGGTADHVAAVNGHKAAVSDFQLVPIGNLAEANNKPLPPKPLTISDFSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKDFLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEFVATNNLRDTAAIASARAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSSPPH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01434 425 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
Phco10g01434 425 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 33 421 - -
Phco10g01434 425 CDD ACT_CM-PDT 319 412 - -
Phco10g01434 425 Gene3D - 214 295 - -
Phco10g01434 425 Gene3D - 125 213 - -
Phco10g01434 425 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Phco10g01434 425 Gene3D - 314 415 - -
Phco10g01434 425 FunFam Arogenate dehydratase 213 295 - -
Phco10g01434 425 FunFam Arogenate dehydratase 314 415 - -
Phco10g01434 425 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Phco10g01434 425 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Phco10g01434 425 CDD PBP2_Ct-PDT_like 128 309 - -
Phco10g01434 425 FunFam Arogenate dehydratase 125 212 - -
Phco10g01434 425 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Phco10g01434 425 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Phco10g01434 425 SUPERFAMILY ACT-like 302 414 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01434 Phco-Chr10 37005215 37006492 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01434 10 37005215 37006492 Phco10g01434 10 37005215 37006492 ECH
Phco10g01434 10 37005215 37006492 Phco9g00991 9 8308530 8309804 PCT