Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01408 ATGATATCAAGTTGTGTTCCAGTTTCAGTTGGGGCAAACCCAACAAGGTTGTTGTCAGACGAACGCACAACATTGTCCCAAGTGCGCCAAATTCATGCCTACATCATTAAAACAAACCTCGTCACTCACGTGCTTTCTGTCACCAAACTTGTCAACTTTCTTTCTCGGAGCAGTGTTCCCTACGACGCCATTTCCGTTTTTGCTCATGCACTCTCTTGCTTCCATGACATGAGGGGAATTGAGTTTTTTGTTCCCCCCACACTCAAAGCTTGTGGCAAGTCGTGTGCATTGGAGGAAGGGAAACAAATAATGGGTTTCATTTTGAAAACCCATTTGTGGAATGACCCGTTTGTCACCAACTCCTTGGTTCGCATGTGTTTGGAGCTTGGCATGGTTGAACTTGCAAGGTCGGTGTTCGATAAAATGCCTAAAAGAGACTTGATTTCTTGGAACTCGTTACTTTCAGGGTACGTGAAAGCTGGTCAAATTGACATGGCACGCGAAGTGTTTGAGAGAATGCCTCAAAGGGACCTAGTTTCGTGCAATACCATGATTGATGGGTACGGGAAGCATGGACTGTGCGAGTTTGCTGAGGAGGTTTTTATGGACATGGGTGTCAGGGATGTGGTGACTTGGACGAGTATGATTTCAGCTTTTGTTCTTAATCATCAACCAAAGAAAGGGTTACGTTTGTTCAGAGAAATGTTGAGTTTAGGAGTTAGACCGGATGCTCCTGCTGTTGTTAGTGTCCTTTCAGCCATTGCTGACCTTGGTTTTGTTGAGGAAGGAAAATGGATACACGGTTATATATTTTCTAATAAGATACTTGACAATTATAATTTTATTGGATCGGCTCTCATAAACATGTATGCTAAATGTGGTCAAATAGAAAATGCGTACCATGTATTTAGAAGCATTTGTCACCGACGAAATGTTGGCGATTGGAATTCTATGATCTCTGGTTTAGCCTTCCATGGACTTGCCCCAGAAGCAATTGAGCTTTTTCAGGAGATGGAAAGGGCAAAACTTAAGCCTGATGATATCACTTTCTTGGGGCTTTTAAGTGCTTGCAATCATGGAGGTCTTATGGATGAGGGTCAGTTTTATTTTGAAACCATGCAAATAAAGTTCAAGATAGTCCCTAAAATTCAGCATTACGGATGCATTGTTGACCTTCTTGGGAGATCAGGTTGCTTAGGACAGGCACTTGAGGTTATACATAATATGCCTTTTGAGCCAGATGTTTTAATTTGGAAGGCTATTCTTTTTGCCAGCATGAAGCACAATAATGTTGTGTTGGGACACACTGCTGCATTGAGAGCCATAGAGTTGGCTCCACAGGATTCGAGCTGTTATGTTCTTCTCTCAAATATTTATGCCAAAATGGGAAGGTGGGATGACGTGAGTAAAGTCAGATCGATGATGAGAAAAAGGGGAGTGAGAAAAATTCCGGGATGTAGCTCTATTCTGATGGATGGTAAAGTGCATCAATTCCTTGTGGGGAAGGCCATGAATGTGGGGTACAACCAAAGTGTTTTGTCTAAGTTAGAGGAGGTTGTGTGTAAGCTGAAATCGGAGGGATATGAACCTGATCTCAATGAGGTTTTTCTAGACATTGAAGAGTGTGAAAAAGAGAGCCAACTAATTCTACACAGTGAAAAATTGGCTCTTGCTTTTGGATTGTCAAGTGTTCCTGAGGGTGTTCCCATTCATATAGTGAAGAATTTAAGAATTTGTTGTGATTGTCACACGTTCATGCAACTGGTTTCAAAAATCTACAATCGTCAAATTATAATCAGAGATCAAAACCGTTTTCATCATTTTGATAAAGGTTGTTGTTCCTGCAGAAATTATTGTTTCATTAAGAAGAGTATGCTCTGTCTCCTTGGAGCAATGGTGATTCCAATATCAGTGGCACTGGTGGTGATTCTAGTTGGGTTGGTTTACAAGGCCATAAAACCCCCAGCTCCCAAAATATGTGGATCCATTGGTGGTCCTCAAGTTACATCACCCAGAGTGAAGCTCAGTGATGGGAGGAATTTGGCCTACCGAGAATTTGGTGTTCCTAAGGAAGAAGCTAGGTACAAGATCATTGTAATTCATGGATACAACAGTTTCAAAGACGAAGCTTTAGCAGTTTCTCAAGAAGTTATTGAGGATCTTGGGATATATTTCCTCCATTTCGACAGGGCAGGTTATGGTGAAAGTGACCCACATTCATCACGTTCTGTGAAGAGTGAAGCTTATGATATTCAAGAACTGGCTGATAAATTGGAGATTGGTGATAAATTTTATATAATTGGAATGTCAATGGGAGGTTACTCTGTTTGGAGCTGCCTAAATTACATTCCACACAGATTATCAGGAGCAGCTTTGGTGGCTCCATTTATAAGCTATTGGTGGCCTTGTTTTCCTGATAATCTTTTGAGAGAGGCATTTCAGATGCTACCTCAGTCAGACAAATGGACTTTTCGAGTTGCACACTACGCCCCTTGGTTGTTCCATTGGTGGATGACACAAAAATGGTTCCCTTCATTGACTTTGACAAATATGTTGTCTCCTGATGATATAGAAATCGTGAAGAGCTTGTCAGAACTCCCAAACACTGCTCAGGAGAGGATAACTCAGCAAGGTGAATATGAATCATTACACCGAGACATAATGAGTGCTTTTGGAAAGTGGGAATTTGGCCCCACAGAGATAGCAAATCCGTTCCCTGATAATAATGGTTCAATCCACATCTGGCAAGGCTTTGAAGATAGAATCATTCCCTACACACTGAACCGTTACATCTCTCACAAATTACCATGGATTCTTTATCACGAGCTTCCTCATGCAGGACATTTGTTTCTCTTCAAGAAAAATGAATGTGAGTCTATTATCAGAGCACTTCTACTCTCACCAGATATTTCGGAATAA 2919 0.4132 MISSCVPVSVGANPTRLLSDERTTLSQVRQIHAYIIKTNLVTHVLSVTKLVNFLSRSSVPYDAISVFAHALSCFHDMRGIEFFVPPTLKACGKSCALEEGKQIMGFILKTHLWNDPFVTNSLVRMCLELGMVELARSVFDKMPKRDLISWNSLLSGYVKAGQIDMAREVFERMPQRDLVSCNTMIDGYGKHGLCEFAEEVFMDMGVRDVVTWTSMISAFVLNHQPKKGLRLFREMLSLGVRPDAPAVVSVLSAIADLGFVEEGKWIHGYIFSNKILDNYNFIGSALINMYAKCGQIENAYHVFRSICHRRNVGDWNSMISGLAFHGLAPEAIELFQEMERAKLKPDDITFLGLLSACNHGGLMDEGQFYFETMQIKFKIVPKIQHYGCIVDLLGRSGCLGQALEVIHNMPFEPDVLIWKAILFASMKHNNVVLGHTAALRAIELAPQDSSCYVLLSNIYAKMGRWDDVSKVRSMMRKRGVRKIPGCSSILMDGKVHQFLVGKAMNVGYNQSVLSKLEEVVCKLKSEGYEPDLNEVFLDIEECEKESQLILHSEKLALAFGLSSVPEGVPIHIVKNLRICCDCHTFMQLVSKIYNRQIIIRDQNRFHHFDKGCCSCRNYCFIKKSMLCLLGAMVIPISVALVVILVGLVYKAIKPPAPKICGSIGGPQVTSPRVKLSDGRNLAYREFGVPKEEARYKIIVIHGYNSFKDEALAVSQEVIEDLGIYFLHFDRAGYGESDPHSSRSVKSEAYDIQELADKLEIGDKFYIIGMSMGGYSVWSCLNYIPHRLSGAALVAPFISYWWPCFPDNLLREAFQMLPQSDKWTFRVAHYAPWLFHWWMTQKWFPSLTLTNMLSPDDIEIVKSLSELPNTAQERITQQGEYESLHRDIMSAFGKWEFGPTEIANPFPDNNGSIHIWQGFEDRIIPYTLNRYISHKLPWILYHELPHAGHLFLFKKNECESIIRALLLSPDISE 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01408 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Phco10g01408 972 Gene3D alpha/beta hydrolase 666 965 IPR029058 -
Phco10g01408 972 Pfam PPR repeat 179 206 IPR002885 -
Phco10g01408 972 Pfam PPR repeat 120 146 IPR002885 -
Phco10g01408 972 Pfam PPR repeat 210 240 IPR002885 -
Phco10g01408 972 Pfam PPR repeat 148 177 IPR002885 -
Phco10g01408 972 Pfam PPR repeat 284 306 IPR002885 -
Phco10g01408 972 Gene3D Tetratricopeptide repeat domain 177 264 IPR011990 GO:0005515
Phco10g01408 972 Pfam PPR repeat family 311 357 IPR002885 -
Phco10g01408 972 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 44 556 IPR046960 GO:0003723|GO:0009451
Phco10g01408 972 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 283 506 - -
Phco10g01408 972 Pfam E motif 428 489 IPR046848 -
Phco10g01408 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Phco10g01408 972 FunFam Alpha/beta-Hydrolases superfamily protein 667 965 - -
Phco10g01408 972 Gene3D Tetratricopeptide repeat domain 283 447 IPR011990 GO:0005515
Phco10g01408 972 Gene3D Tetratricopeptide repeat domain 64 176 IPR011990 GO:0005515
Phco10g01408 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Phco10g01408 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Phco10g01408 972 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 145 IPR002885 -
Phco10g01408 972 Pfam DYW family of nucleic acid deaminases 527 618 IPR032867 GO:0008270
Phco10g01408 972 SUPERFAMILY alpha/beta-Hydrolases 666 952 IPR029058 -
Phco10g01408 972 NCBIfam pentatricopeptide repeat 148 178 IPR002885 -
Phco10g01408 972 NCBIfam pentatricopeptide repeat 210 244 IPR002885 -
Phco10g01408 972 NCBIfam pentatricopeptide repeat 120 146 IPR002885 -
Phco10g01408 972 NCBIfam pentatricopeptide repeat 179 208 IPR002885 -
Phco10g01408 972 NCBIfam pentatricopeptide repeat 315 346 IPR002885 -
Phco10g01408 972 Pfam Serine aminopeptidase, S33 692 876 IPR022742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01408 Phco-Chr10 36696471 36703344 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01408 10 36696471 36703344 Phco10g01408 10 36696471 36703344 ECH
Phco10g01408 10 36696471 36703344 Phco9g01029 9 8791777 8801987 ECH
Phco10g01408 10 36696471 36703344 Phco9g01029 9 8791777 8801987 PCT