Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00930 ATGAGCAAAGCCCTGGGAGAAGAGGAAGACGAAGAAGAACAAGAACAAGACCAAGACCAAGACCAAGACCAAGACTGTTTCTACGACTCACACGACCGTTTACTCTCTCTCTCATCCTCCTGCTCCTGCTCCAACTCCAACTCCGACAACGACGAAACCGAGAACGACGCCCAACCCCATCGAAACGACACACTTCCCAATTTCCCCCTCACCAACAACTACGACATATGGATCTCCCAACCCTCCTCTGTCTCCGAGCGCCGCACGCGCCTGCTCCTATCACTCGGCCTCTCCTCCCTCACGCGCCAAAACCCTCACCCTGCCCCACGCGATCGCGTCTCCCCAATCCGATCCAAACCTGACAACACAACTGCCGCCGCCGCCGCCACCTCGTCCTCCGCCGCCGCCAATCCTAGGCCTCCAAACCCCAAACCTCCGACCGAAGAGCTCTGCACTATACGCGATCTCGACAACGGGAAGGAGTTTGTGGTGAACGATTGGGAGAATCTGCGGGAGGTTGCCACGGGGCGGCACTTGACGATGGAGGAGTTCGAGATGACGGTGGGGCACTCCCCCATCGTTCAGGAGCTAATGCGGAGGCAGAATGTTGAAGAGGCTAGCGTCGATTCCAATGCGAGTGCCTCCAAGGTGAAGAAGAAAGGAGGGGGGTGGTTGAAGAGTATCAAGAGTGTCGCGAGCTCCGTCGCGGGGTACAGGGATCGACGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGCGGCCGGCGGTCCAGCTCCGCCACCGACGACAGCCAGGAAGCGGCGTTTCACGGTCCGGAGAGGGTGAGAGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAGTGGGTCTATTTGGAGCATTAAGTTCAGTTTGGATGGGAAGTATTTGGCGAGTGCTGGTGAGGATTGTGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTGGATAGGGAGAAGGGGGAGGATGGGGGGAATGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGCCGACGGCTGCGGCAATGCTATCTCCGCTCAGGGATGTGGAGAGGAAGAGGAAGGGGAGGTCCAGCGTGAGTAGGAAGTCCTTGAGCCTCGACCAGTTTGTCGTTCCGCAGACCGTGTTTGCACTCACTGACAAACCCGTCTGCTCGTTTAAGGGACATCTGCATGATGTGCTTGACCTCTCATGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTTTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACAGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCGCTGGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAAAACAAGAAAAAGAAATCACATCAGAAGAAAATTACTGGTTTCCAGTTTGCCCCCGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTGGTTGATGGTATTGATCTGATTCATAAGTTTAAAGGCTTTCGCAATGCAACTAGCCCAATTTCAGCATCCCTCACAACAAATGGTAAATATGTTGTCGCAGCGAGTGAGGACTCCCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCTAACAGAAGCAAAGGTGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCTTGGGACATGCATGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAACGCCGATGAAGTCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTCACCGAGGGTTCAAGACCTGCATCTTGTTACAACAATAGTCCACGCCATGCAACCATTGCAAGTGCCACAAACAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTCAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2367 0.5087 MSKALGEEEDEEEQEQDQDQDQDQDCFYDSHDRLLSLSSSCSCSNSNSDNDETENDAQPHRNDTLPNFPLTNNYDIWISQPSSVSERRTRLLLSLGLSSLTRQNPHPAPRDRVSPIRSKPDNTTAAAAATSSSAAANPRPPNPKPPTEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNASASKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQEAAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGNVNMFLVVNGSPEPTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHQKKITGFQFAPGSSSEVLITSADSRIRVVDGIDLIHKFKGFRNATSPISASLTTNGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELDNNADEVSSANHPPTPVEENFVTEGSRPASCYNNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00930 788 MobiDBLite consensus disorder prediction 118 137 - -
Phco10g00930 788 MobiDBLite consensus disorder prediction 1 74 - -
Phco10g00930 788 Gene3D - 377 645 IPR015943 GO:0005515
Phco10g00930 788 MobiDBLite consensus disorder prediction 236 273 - -
Phco10g00930 788 MobiDBLite consensus disorder prediction 33 52 - -
Phco10g00930 788 FunFam WD repeat-containing protein 44 395 661 - -
Phco10g00930 788 FunFam Transducin/WD40 repeat-like superfamily protein 255 362 - -
Phco10g00930 788 PRINTS G protein beta WD-40 repeat signature 474 488 IPR020472 -
Phco10g00930 788 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Phco10g00930 788 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Phco10g00930 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 448 - -
Phco10g00930 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 488 IPR001680 GO:0005515
Phco10g00930 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 330 - -
Phco10g00930 788 Gene3D - 240 364 IPR015943 GO:0005515
Phco10g00930 788 MobiDBLite consensus disorder prediction 7 23 - -
Phco10g00930 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 454 IPR001680 GO:0005515
Phco10g00930 788 MobiDBLite consensus disorder prediction 100 149 - -
Phco10g00930 788 SUPERFAMILY WD40 repeat-like 292 624 IPR036322 GO:0005515
Phco10g00930 788 Pfam WD domain, G-beta repeat 296 328 IPR001680 GO:0005515
Phco10g00930 788 Pfam WD domain, G-beta repeat 585 622 IPR001680 GO:0005515
Phco10g00930 788 Pfam WD domain, G-beta repeat 450 487 IPR001680 GO:0005515
Phco10g00930 788 Pfam WD domain, G-beta repeat 409 444 IPR001680 GO:0005515
Phco10g00930 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 338 IPR001680 GO:0005515
Phco10g00930 788 SMART WD40_4 490 528 IPR001680 GO:0005515
Phco10g00930 788 SMART WD40_4 581 622 IPR001680 GO:0005515
Phco10g00930 788 SMART WD40_4 448 487 IPR001680 GO:0005515
Phco10g00930 788 SMART WD40_4 407 445 IPR001680 GO:0005515
Phco10g00930 788 SMART WD40_4 290 329 IPR001680 GO:0005515
Phco10g00930 788 SMART WD40_4 535 580 IPR001680 GO:0005515
Phco10g00930 788 MobiDBLite consensus disorder prediction 672 691 - -
Phco10g00930 788 PANTHER WD REPEAT DOMAIN 44 18 785 IPR040324 -
Phco10g00930 788 MobiDBLite consensus disorder prediction 239 260 - -
Phco10g00930 788 MobiDBLite consensus disorder prediction 60 74 - -
Phco10g00930 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 454 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00930 Phco-Chr10 27429407 27434823 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00930 10 27429407 27434823 Phco10g00930 10 27429407 27434823 ECH