Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00928 ATGGCCCTCCAAGCTGCTTCTCTTGTTCCTGCTTCTTTCTCTGTCCCTAAAGAGGGAAAGAGTTGTGTGTCTCTCAAGGACTCCACACTGTTCGGTCTTTCATTATCAGAACCTAGCAAAGCTGACTTCAGCTCCTCTGCATTGAGGTGCAAGAGGGAATTCCAGCAAAAAGTTGGTGCTGTGAGGGCGGAGACAGTGGCTACAGCCTCTCCAGCAGTCACCAAGTCTACACCAGAAGGCAAGAAAACACTGAGGAAAGGAAGTGTTGTGATAACTGGGGCTTCCTCTGGATTAGGCCTGGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAATGGCATATAATAATGGCCTGCAGGGATTACCTCAAAGCTGCAAGAGCTGCAAAATCTGCTGGCATGGCTAAGGAAAACTACACCATCATGCACTTGGACCTTGCCTCTCTTGACAGTGTCCGCCAATTTGTTGATAACTTCAGAAGATCAGAAATGCCACTAGATGTGTTGGTTTGCAATGCTGCCGTTTACTTGCCAACTGCTAAGGAACCTACATTCACTGCTGAAGGCTTTGAACTTAGTGTTGGAACAAACCATCTAGGACATTTCCTCCTTGCTCGCTTGTTGCTTGAGGACTTGAGAAAATCTGATTACCCTTCAAAGCGCATGATCATTGTTGGTTCAATCACTGGGAACACCAACACATTGGCTGGTAATGTACCTCCCAAGGCTAACCTTGGTGACCTGAGGGGACTTCAGGGTGGTTTGAATGGGCTAAACAGTTCAGCCATGATTGATGGTGGAGACTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTATGTAATATGCTCACAATGCAGGAATTCCACAGACGATACCACGAGGAAACTGGAATCACGTTCTCATCGCTCTACCCCGGTTGCATTGCCACAACCGGCTTGTTCAGAGAGCACATTCCCTTGTTCAGAACACTATTCCCTCCATTCCAGAAGTACATAACCAAAGGCTTTGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCCTTACAAAATCTGGTGTTTACTGGAGCTGGAATAAAACATCTGCTTCATTTGAGAACCAGTTGTCACAGGAGGCCAGCGATGTTGAAAAGGCTCGTAAGGTGTGGGAGATTAGTGAGAAGCTCCTTGGTTTGGCCTGA 1200 0.4725 MALQAASLVPASFSVPKEGKSCVSLKDSTLFGLSLSEPSKADFSSSALRCKREFQQKVGAVRAETVATASPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHIIMACRDYLKAARAAKSAGMAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLARLLLEDLRKSDYPSKRMIIVGSITGNTNTLAGNVPPKANLGDLRGLQGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGFVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARKVWEISEKLLGLA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00928 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Phco10g00928 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Phco10g00928 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Phco10g00928 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 366 IPR036291 -
Phco10g00928 399 CDD LPOR_like_SDR_c_like 86 398 - -
Phco10g00928 399 NCBIfam protochlorophyllide reductase 85 399 IPR005979 GO:0016630
Phco10g00928 399 Gene3D - 73 398 - -
Phco10g00928 399 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 399 IPR005979 GO:0016630
Phco10g00928 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00928 Phco-Chr10 27257849 27260132 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00928 10 27257849 27260132 Phco10g00928 10 27257849 27260132 ECH