Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00927 ATGGCCGATCGGTTCTTTCCAAACGAGATGCAACGCTTTGTCGCAGAGACAACAGACCTAATTCCATTGGCGGACTCTCTCACTGCCCTTCTCTCTCTCCCTTACCAGACCCTCTCTGAAAAGTTCCAAGCGTCTGCATTTCACTTGAAACAATCGGTGGTGAGGGAAACATGGGGATCACGCGGGAAGCGTGTGAAGGACTACACCCTTTACACGGGGGCTCTTGGAACAGCATACCTGCTTTTCAAGGCCTACCAAGTAACCAAGGATGGGAATGATCTTAACTTGTGCTCAGAGATTGTTGAGGCCTGTCACTCTGCTTCAGCAGATTCTGGACGTGTGACATTTCTCTGTGGGCGTGCTGGTGTTTGTGTTCTTGGTGCTGTTGTAGCTAAGCATACCAGTGATGATAGACTACTTGACTATTACCTGAGACAATTCAAAGAGATTGTAATACCTTGTGATTCGCCCAATGAGCTATTGTACGGCAGAACAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATTGGTCACAACACAATACCTACTACTCACATGAGGTCAGTAGTGGATGAAGTTATCACCACTGGCAGACAATTAGGTCACAAGGGAAGATGTCCTCTGATGTATGAATGGCATGGGAAGAAATACTGGGGTGCTGCACATGGACTTGCAGGAATTATGCATGTTTTGATGGACATGGAACTCAAGCCAGATGAGGTGGAAGAAGTCAAGGGTACCCTACGTTACATGATTAACAATCGTTTCCCTAGTGGCAATTATCCCTCCAGCGAAGGAAGTGAAAATGACCGTCTTGTGCATTGGTGTCATGGTGCTCCTGGAGTCATTCTTACCCTTGTAAAGGCAGCTGAGGTTTTTGGGGACAAGGAATTTTTGAAAGCAGCTGTAGATGCAGGGGAAGTAGTATGGAAGAGGGGTCTGCTTAAGCGAGTTGGGATCTGTCATGGCATCAGTGGGAACACCTATGTCTTTCTTTCCCTTTACAGATTGACGGGAAATGAGGAGAACCTGTACATGGCCAAAGCATTTGGTTGTTTCCTACTTGATAGGGCACAAAAACTGATCTCAGAAGGAAAGATGCATGGAGGAGATCGCCCCTATTCCTTATTTGAAGGTCTTGGAGGAATGGCATATATTTGTCTAGATATGGTTGATCCAAAAATGGCCAAGTTCCCAGGAGTAAACTGTGATGCATCATGCATGGTTCTAGATTTCAGAAAAACGTTTATTATTTCAGAGGTTATGAGCAAGTTGGCCACACCCTCATGGGTGAATGATTTTATTGAGTCTTGA 1320 0.453 MADRFFPNEMQRFVAETTDLIPLADSLTALLSLPYQTLSEKFQASAFHLKQSVVRETWGSRGKRVKDYTLYTGALGTAYLLFKAYQVTKDGNDLNLCSEIVEACHSASADSGRVTFLCGRAGVCVLGAVVAKHTSDDRLLDYYLRQFKEIVIPCDSPNELLYGRTGYLWACSFLNKHIGHNTIPTTHMRSVVDEVITTGRQLGHKGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEEVKGTLRYMINNRFPSGNYPSSEGSENDRLVHWCHGAPGVILTLVKAAEVFGDKEFLKAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNEENLYMAKAFGCFLLDRAQKLISEGKMHGGDRPYSLFEGLGGMAYICLDMVDPKMAKFPGVNCDASCMVLDFRKTFIISEVMSKLATPSWVNDFIES 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00927 439 CDD euk_LANCL 70 401 - -
Phco10g00927 439 SMART LANC_like_2 64 405 IPR007822 GO:0031179
Phco10g00927 439 PANTHER LANC-LIKE PROTEIN 1 404 - -
Phco10g00927 439 Pfam Lanthionine synthetase C-like protein 65 403 IPR007822 GO:0031179
Phco10g00927 439 SUPERFAMILY LanC-like 63 401 - -
Phco10g00927 439 Gene3D - 1 404 IPR012341 GO:0005975
Phco10g00927 439 PRINTS LanC-like protein superfamily signature 274 294 IPR007822 GO:0031179
Phco10g00927 439 PRINTS LanC-like protein superfamily signature 67 85 IPR007822 GO:0031179
Phco10g00927 439 PRINTS LanC-like protein superfamily signature 219 235 IPR007822 GO:0031179
Phco10g00927 439 PRINTS LanC-like protein superfamily signature 375 392 IPR007822 GO:0031179
Phco10g00927 439 PRINTS LanC-like protein superfamily signature 158 173 IPR007822 GO:0031179
Phco10g00927 439 PRINTS LanC-like protein superfamily signature 320 333 IPR007822 GO:0031179
Phco10g00927 439 FunFam LanC-like protein 2 1 405 - -
Phco10g00927 439 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Phco10g00927 439 PRINTS Eukaryotic LanC-like protein family signature 254 269 IPR020464 -
Phco10g00927 439 PRINTS Eukaryotic LanC-like protein family signature 336 354 IPR020464 -
Phco10g00927 439 PRINTS Eukaryotic LanC-like protein family signature 208 220 IPR020464 -
Phco10g00927 439 PRINTS Eukaryotic LanC-like protein family signature 291 312 IPR020464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00927 Phco-Chr10 27254122 27257643 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00927 10 27254122 27257643 Phco10g00927 10 27254122 27257643 ECH