Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00917 ATGGGAGACCGTTGTAGACATTTTTCCATTGAGGAATTGCCATCACATTTGGTTTTAGATATTTTGTGCTCGGGTAGGCTCAGTGCAATGGACCTTGTTTGCTTAGAATTGACTTCCAAAACTTTTGGTGGTGTTCATGGCTTGTACCCTTTCAAGTTTAAGTCCTTGATTGACTTTGCTGCATTTCAATTGTGTGCCTCCCATGTTACATATGCTGGGATGGGTTTGATTTCTCAGAGGGAGTTGTATGACAGATGTGGAGGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTGTGGAACAATCCTCTCAGATGGTCGAGACATCATCAGGCAATATGCAAATAACAACTGGAAAGTATCACACCTTGTTGATCAGCAATGCTTCTGTCTATTCCTGTGGTTCTGGTTTATGTGGAGTACTTGGTCAAGGGCCTGAAACAACACAGTGTGTAGCATTTACCCGGATTAATTTCCCACCTTTGGCACGTGTGGTTCATGTTTCAGCCTCCTTTAATCATGCAGCTTTTGTCTTGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCAGCTTCTTGCTGTGGACACAGAGATACTAGCCGACCAATTTCCAGGCCACGTCTTGTTGAATCCCTTAAGGGGATTCCTTGCAAACAGGTTGCGGCGGGGCTTAACTTCACAGTCTTCCTCACCAGACAAGGTCATGTGTATACGTGTGGAACCAACACACATGGCCAACTTGGTCATGGTGACACTCAGGACAGGCCAACCCCCAAAATGATTGAAGCTCTTGGATCTGTTGTTCAGATTGCTGCAGGACCAAGCTATATCTTATCCGTAACAGAAAATGGAACAGTGTACTCCTTTGGGTCAGGTGCAAATTTCTGTCTTGGCCATGGTGAGCAACACAATGAGTTGCAGCCACGTGCTGTACAGAAATTCAGACGGAAAGGTATTCATATTGTCCGAGTATCTGCTGGGGATGAGCATGCAGTGGCCCTTGACTCAAATGGATTTGTATATACATGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGCGATGAGATTGAGAAGACAACTCCAGAGATGTTGACTAGTCTTAAGAATCAACTGGCTGTTCAGGTCTGTGCAAGGAAGAGGAAAACATTTGTGCTTGTTGATTCTGGTTTAGTCTATGGCTTTGGCTCCATGGGATTTGGCAGCCTCGGATTCCTGGACAGAAGGGTATTAGATAAAGTATTGAAACCTCGAATCTTAGATACCTTGAAATCTCACCATGTTTCTCAAATTAGCACTGGCTTGTTCCACACTGTGGTGATCACTAGCAGGGGAAAGATATTTGGCTTTGGAGATAATGAAAGAGCACAACTTGGTCACGACACATTAAGAAGCTGCCTTGAGCCAACTCAAATTTTCAATAGAGAGGCATCGGAAGACGTAGAAAGCATGTGA 1458 0.4451 MGDRCRHFSIEELPSHLVLDILCSGRLSAMDLVCLELTSKTFGGVHGLYPFKFKSLIDFAAFQLCASHVTYAGMGLISQRELYDRCGGNWKRVLRFLQSVEQSSQMVETSSGNMQITTGKYHTLLISNASVYSCGSGLCGVLGQGPETTQCVAFTRINFPPLARVVHVSASFNHAAFVLQSGEVFTCGDNSASCCGHRDTSRPISRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNTHGQLGHGDTQDRPTPKMIEALGSVVQIAAGPSYILSVTENGTVYSFGSGANFCLGHGEQHNELQPRAVQKFRRKGIHIVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEMLTSLKNQLAVQVCARKRKTFVLVDSGLVYGFGSMGFGSLGFLDRRVLDKVLKPRILDTLKSHHVSQISTGLFHTVVITSRGKIFGFGDNERAQLGHDTLRSCLEPTQIFNREASEDVESM 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00917 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 339 390 IPR000408 -
Phco10g00917 485 SUPERFAMILY RCC1/BLIP-II 124 475 IPR009091 -
Phco10g00917 485 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Phco10g00917 485 Pfam Regulator of chromosome condensation (RCC1) repeat 284 335 IPR000408 -
Phco10g00917 485 Pfam Regulator of chromosome condensation (RCC1) repeat 338 379 IPR000408 -
Phco10g00917 485 Pfam Regulator of chromosome condensation (RCC1) repeat 235 275 IPR000408 -
Phco10g00917 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 445 IPR000408 -
Phco10g00917 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 338 IPR000408 -
Phco10g00917 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 284 IPR000408 -
Phco10g00917 485 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 325 335 IPR000408 -
Phco10g00917 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Phco10g00917 485 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 432 442 IPR000408 -
Phco10g00917 485 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 164 474 - -
Phco10g00917 485 PRINTS Chromosome condensation regulator RCC1 signature 432 448 IPR000408 -
Phco10g00917 485 PRINTS Chromosome condensation regulator RCC1 signature 341 357 IPR000408 -
Phco10g00917 485 PRINTS Chromosome condensation regulator RCC1 signature 448 462 IPR000408 -
Phco10g00917 485 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Phco10g00917 485 PRINTS Chromosome condensation regulator RCC1 signature 322 335 IPR000408 -
Phco10g00917 485 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 485 IPR000408 -
Phco10g00917 485 Gene3D - 52 284 IPR009091 -
Phco10g00917 485 Pfam Regulator of chromosome condensation (RCC1) repeat 429 457 - -
Phco10g00917 485 Gene3D - 285 483 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00917 Phco-Chr10 26655004 26661557 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00917 10 26655004 26661557 Phco10g00917 10 26655004 26661557 ECH