Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00709 ATGGATCAAATAACGGATTCAGAGATGGATCAACAGAGACGAGGCTATCATCATTCTGAACCCTGTATCCTTACTAGAGGAACCACAAACATCTCACAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTCTGCCAGATTCTTATGACAATGCTAGGGTGTATGGTGTTACACAATACAATGGCATTCAGCATCCCCATAATCTTGATATGGGTGTGCCAGCTGCAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTGGTGCTGGCGTTTTCCCTCTGCCTCTAAATCACAGAGCCTCTGATCAGTTGCCTGGTTCAAGTACATTTGCAGTTGCTGGGGTTTCTTCAGATAATTTTGGAAGAAGTTCTGGTTTCATGGATGATGTTAGAGGTCCTTACAAAAGGAAAATTGCTGAAGGGATGAGAGGAAATTACCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCAAGACACACTACTGATGGTGTTGCTATGATGGATGCTGCACCATTTTCATTCCGCATCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCAGGGCAGGTGAGTCCATTATGGTGCATGACCATAATCATTTGATTCATGGAAACTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCATGGTTGGACCAGCAGATGAACGGTAACAATAATGATGGCCATACTACACCCTGGAATCAGTCGCTTCCAATGCCTTATGTACAAGGACCTACTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGTTTGCAGAGATATCAAGATCCAGCTGGAAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAACCAACAGCACCATAATTATCATCACCCAGCACTGCCTATGCAAGGAGTAAGAGGTCACAATATCAACTTTCACCCTGCAGTAAGTGCAGCATCATTTAGAGTTCCAATAAATCCTTCACGCGGTGTTGCTATCCCAGCACAGCCTGGTTTTGAGCTAGGTCCTAGGCATGTTGGCCCTGCACCATCAGCTGGCCTCCGGATTTACCGACCTCATAGAGGGGCTGTGCCTGAAACTACTCTTGGACATCGAAGTCTTCCACCTGTGGGCTTTCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGATCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGGCAATGTTAGCACCGGTTTATCAGAGGAAACCATTACAAATCAATTGAAAACAAAATCTTATTCAACAAGTGCTGCTGGTATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAGGAAATGGTTGGTGGTGAAAAATGTCTGCCCCATATGCAAATCAGAGGCTTTGACTCCTGGAAGGAAGGATGTATAG 1587 0.4379 MDQITDSEMDQQRRGYHHSEPCILTRGTTNISQPNNMHAMVRASGNTTNVDSHFLPDSYDNARVYGVTQYNGIQHPHNLDMGVPAAANLYYSGINPSSGAGVFPLPLNHRASDQLPGSSTFAVAGVSSDNFGRSSGFMDDVRGPYKRKIAEGMRGNYQYFNASSSSSIAPPNARHTTDGVAMMDAAPFSFRIPSLVEVGPHGSAWSRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQMNGNNNDGHTTPWNQSLPMPYVQGPTVNGGSLDSASMGLQRYQDPAGSRNGLRFPHPLPVNQQHHNYHHPALPMQGVRGHNINFHPAVSAASFRVPINPSRGVAIPAQPGFELGPRHVGPAPSAGLRIYRPHRGAVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITNQLKTKSYSTSAAGINLEEEACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTPGRKDV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00709 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
Phco10g00709 528 Pfam Ring finger domain 474 517 IPR001841 -
Phco10g00709 528 CDD RING-H2_RNF24-like 474 520 - -
Phco10g00709 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 521 IPR013083 -
Phco10g00709 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 142 521 IPR045191 GO:0061630
Phco10g00709 528 FunFam E3 ubiquitin ligase BIG BROTHER 436 521 - -
Phco10g00709 528 MobiDBLite consensus disorder prediction 241 262 - -
Phco10g00709 528 SUPERFAMILY RING/U-box 469 521 - -
Phco10g00709 528 SMART ring_2 476 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00709 Phco-Chr10 8644936 8647254 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00709 10 8644936 8647254 Phco10g00709 10 8644936 8647254 ECH