Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00703 ATGTACGGATTCTTGCCGTGTTCCAATAACATACTTGGCCATCTTTTCCTCATTTTGGTTTATGAGTATTTGTTGTTCCATGGAGAGTCATATTTGGCTACTGGAGGTGAGCAAATCTTCAAGATTCTTGGCCCAGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGGGCACTTCCTGAGTCCTTAATTCTTGTTGTTACTGGACTTTCCAGTGACAAGGAGAGTGCACAAGAGTATGCTTCCACTGGTGTCGGTTACGATATCACTATGGATATTCCCCGTTTCTTCCACTTCTCTTCTGCAGCACGCAATGTGACTTTGATGGTTGCTCTTATAGTAGCTGTTACTTTTCTTATCTCATACTTCCTTTACCAGGTCTTTAAACCTCAGATAGAGAAAACTAGACTGGAGTATATTAAGCATCATGACTTAATATTAAGAATTTTTGAACGTGTTGAGAAACAAACTCTGCAAAAGATCCTGGCCGAGGATGGAACTCCCAATGTGGCTGCAATAAGTGGGTTGTATCATGAAATTAATCAGCATGGGGGCAACGACTTGTTAGCTTCTGAAGTGAAAGAACTCTTCTTTCGGAACAAATTGACTGACACAAATATCAAAGAAGAACAGATAGCAGATTTGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTTACTGGTTTAACAGATTACATTAACCAAACAAAGCATGCCTTGGATAGACAATGCCTTCCAAAAGAATCTTTGAGCAATATGTATAAGACTTTTATCAAGCCATGGATTGAACTCGTGAGAAAGGAACGTGAATTGAAGGAACATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATGATATGGTTGGCAGGCTGCAAAATGATGATCGTACACCTGACAAAGCTGCAATCAAAAGGTTGTTTGAGGAAATTGATGTCAACAAGGATAACCACATTTCAAGATCTGAATTGGAAAAAGTAGTCAAGGACATCCAGTTTAACAAGTTTGTAGATGCTCAGGAGGCAGTTACAAAACTTGCTCAAGATCTTGATCTCAACGGAGACGATGAAATTAGTAAGACCGAGTTCATTGAAGGTCTTACAAAATGGATAAACTCAGATTCCAGCCGAGCTGCTAACTCAAAATCTTCATCTCAGGGAATTCGTAAAACCTGGGAAGATGTTGAAAGGGTAATGAAAGAGAAGCAAACCAATGGGGCTTCTGCATGGTTGACGGCCATAGGATATGTGGTATTGGGGGTTACTATGCTGGCTCTTCTTGCAGAACCCTTAATAGCAAGTGTTCAAAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATCTCATTAATTTTGGTACCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGCAGTAATACTTCTAAGACAATATACGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATTTCTATTCTCATATACATGCGTGAGATCAGTTGGCAATTCTCAGCTGATGTACTGGTTGTGGCAATAGTTTGTGCAGTAATGGGCCTCACTGCTTGTTTTCGCCCCACTTTTCCTCTTTGGACATCCTTCGCTGCATACTTCATGTACCTAATAGCATTGCTCTTGGTTTGTGTCCTCAAAGATGTTCTCAATTATATTTAG 1719 0.3956 MYGFLPCSNNILGHLFLILVYEYLLFHGESYLATGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGYDITMDIPRFFHFSSAARNVTLMVALIVAVTFLISYFLYQVFKPQIEKTRLEYIKHHDLILRIFERVEKQTLQKILAEDGTPNVAAISGLYHEINQHGGNDLLASEVKELFFRNKLTDTNIKEEQIADLLKVFDRNGDQIITKEEFVTGLTDYINQTKHALDRQCLPKESLSNMYKTFIKPWIELVRKERELKEHLISEVLKHAQNDMVGRLQNDDRTPDKAAIKRLFEEIDVNKDNHISRSELEKVVKDIQFNKFVDAQEAVTKLAQDLDLNGDDEISKTEFIEGLTKWINSDSSRAANSKSSSQGIRKTWEDVERVMKEKQTNGASAWLTAIGYVVLGVTMLALLAEPLIASVQKFSEEAGISSFFISLILVPLATNFREATSAIKEASHKKSSNTSKTIYEIYGAVFMNNILGFVVISILIYMREISWQFSADVLVVAIVCAVMGLTACFRPTFPLWTSFAAYFMYLIALLLVCVLKDVLNYI 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00703 572 ProSitePatterns EF-hand calcium-binding domain. 220 232 IPR018247 -
Phco10g00703 572 Gene3D - 167 246 - -
Phco10g00703 572 Pfam EF-hand domain pair 308 371 IPR002048 GO:0005509
Phco10g00703 572 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Phco10g00703 572 SUPERFAMILY EF-hand 200 377 IPR011992 -
Phco10g00703 572 ProSitePatterns EF-hand calcium-binding domain. 318 330 IPR018247 -
Phco10g00703 572 ProSiteProfiles EF-hand calcium-binding domain profile. 207 242 IPR002048 GO:0005509
Phco10g00703 572 SMART efh_1 211 239 IPR002048 GO:0005509
Phco10g00703 572 SMART efh_1 348 376 IPR002048 GO:0005509
Phco10g00703 572 SMART efh_1 309 337 IPR002048 GO:0005509
Phco10g00703 572 Pfam Sodium/calcium exchanger protein 420 562 IPR004837 GO:0016020|GO:0055085
Phco10g00703 572 ProSiteProfiles EF-hand calcium-binding domain profile. 305 340 IPR002048 GO:0005509
Phco10g00703 572 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 78 IPR004713 GO:0006812|GO:0008324|GO:0016020
Phco10g00703 572 Gene3D - 247 389 - -
Phco10g00703 572 CDD EFh 310 374 IPR002048 GO:0005509
Phco10g00703 572 ProSitePatterns EF-hand calcium-binding domain. 357 369 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00703 Phco-Chr10 8472681 8481799 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00703 10 8472681 8481799 Phco10g00703 10 8472681 8481799 ECH