Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00702 ATGTCAAAAGTTGGATGCTTCACTTTCTTTGCTTTCTTGGTGGCACTTCATGTCGAGTGCCGTTGTCTTCGCCCTACTGTTTCTGATGGGGTTGACGCTGTTCAATCCCATGAGGCTTATTTGCAACTCATAGACCAAAAGATTGAATCTTCTTCTGATGGGCATTACTGTAAGCAAATGTACGGATTCTTGCCGTGTTCCAATAACATACTTGGCCATCTTTTCCTCATTTTGGTTTATGAGTATTTGTTGTTCCATGGAGAGTCATATTTGGCTACTGGAGGTGAGCAAATCTTCAAGATTCTTGGCCCAGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGGGCACTTCCTGAGTCCTTAATTCTTGTTGTTACTGGACTTTCCAGTGACAAGGAGAGTGCACAAGAGTATGCTTCCACTGGTGTCGGTTTGTTGGCGGGATCATCCATCTTCCTTCTAACTGTAGTGTGGGGAACATGTGTTATCATTGGCAAGCAAAACATAAATGACTCTAACTCTGATGACTTACATTCATCGAGTACAGGAATAAAAAAATCACTAACTGGTTACGGTATCACTATGGATGTAGACACTAGAGAGATGGCAAAAATCATGGTTTTCTCAATTATACCACTTATCATAATGCAGATTCCCCGTTTCTTCCACTTCTCTTCTGCAGCACGCAATGTGACTTTGATGGTTGCTCTTATAGTAGCTGTTACTTTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAGATAGAGAAAACTAGACTGGAGTATATTAAGCATCATGACTTAATATTAAGAATTTTTGAACGTGTTGAGAAACAAACTCTGCAAAAGATCCTGGCCCAGGATGGAACTCCCAATGTGGCTGCAATAAGTGGGTTGTATCATGAAATTAGTCAGCATGGGGACAATGATTTGTTAGCTTCTGAAGTGAAAGAACTCTTGTTTGGGAACAAATTGACCGACACAAATATCAAAGAAGAACAGATAGCAGATTTGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGTTTAACAGAATACATTAACCAAACAAAGCATGCCTTGGATAGAAAATACCTTCCAAAAGAATCTTTGAGCAATATGTATAAGACTTTTATTAAGCCATGGATTGAACACGTGAGAAAGGAACGTGAATTGAAGGAACATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATGATATGGTTGGCAGGCTGCAAAATGATGATGGTACACCTGACAAAGCTGCAATCAAAAGGTTGTTTGAGGAAATTGATGTCAACAAGGATAACCGCATTTCAAGATCTGAATTGGAAAAAGTAGTCAAGGGCATCCAGTTTAACAAGTTTGTAGATGCTGAGGAGGCAGTTACAAAACTTGCTCAAGATCTTGATCTCAACGGAGACGATGAAATTAGTAACACGGAGTTCATTGAAGGTTTTACAAAATGGATGAACTCAGATTCCAGCCGAGCTGCTAACTCAAAATCTTCATCTCATGGAATTCATAAAACCTGGGAAGATGTTGAAAAGGTAATGGAAGAGAATCAAACCAATGGGGCTTCTGCATGGTTGACGGCCATAGGATATGTGGTATTGGGGGTTACTATGCTGGCTCTTCTTGCAGAACCCTTAATAGCAAGTGTTCAAAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATCTCATTCATTTTGGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGCAGTAATACTTCTCAGACAATATACGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATTTCTATTCTCATATACATGCGTGAGATCAGTTGGCAATTCTCAGCTGATGTACTGGTTGTGGCAATAGTTTGTGCAGTAATGGGCCTCGCTGCTTGTTTTCGCCCCACTTTTCCTCTTTGGACATCCTTCGCTGCATACTTCATGTACCTGATAGCATTGCTCTTGGTTTTTGTCCTCAAAGATGTTCTCAATTATGTTTAG 2097 0.3972 MSKVGCFTFFAFLVALHVECRCLRPTVSDGVDAVQSHEAYLQLIDQKIESSSDGHYCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLATGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGLLAGSSIFLLTVVWGTCVIIGKQNINDSNSDDLHSSSTGIKKSLTGYGITMDVDTREMAKIMVFSIIPLIIMQIPRFFHFSSAARNVTLMVALIVAVTFLISYFIYQVFKPQIEKTRLEYIKHHDLILRIFERVEKQTLQKILAQDGTPNVAAISGLYHEISQHGDNDLLASEVKELLFGNKLTDTNIKEEQIADLLKVFDRNGDQIITKEEFVTGLTEYINQTKHALDRKYLPKESLSNMYKTFIKPWIEHVRKERELKEHLISEVLKHAQNDMVGRLQNDDGTPDKAAIKRLFEEIDVNKDNRISRSELEKVVKGIQFNKFVDAEEAVTKLAQDLDLNGDDEISNTEFIEGFTKWMNSDSSRAANSKSSSHGIHKTWEDVEKVMEENQTNGASAWLTAIGYVVLGVTMLALLAEPLIASVQKFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSQTIYEIYGAVFMNNILGFVVISILIYMREISWQFSADVLVVAIVCAVMGLAACFRPTFPLWTSFAAYFMYLIALLLVFVLKDVLNYV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00702 698 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 59 691 IPR004713 GO:0006812|GO:0008324|GO:0016020
Phco10g00702 698 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Phco10g00702 698 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Phco10g00702 698 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Phco10g00702 698 Pfam EF-hand domain pair 434 498 IPR002048 GO:0005509
Phco10g00702 698 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Phco10g00702 698 Gene3D - 293 373 - -
Phco10g00702 698 FunFam Sodium/calcium exchanger NCL 374 514 - -
Phco10g00702 698 CDD EFh 436 500 IPR002048 GO:0005509
Phco10g00702 698 SMART efh_1 435 463 IPR002048 GO:0005509
Phco10g00702 698 SMART efh_1 474 502 IPR002048 GO:0005509
Phco10g00702 698 SMART efh_1 337 365 IPR002048 GO:0005509
Phco10g00702 698 Gene3D - 374 515 - -
Phco10g00702 698 SUPERFAMILY EF-hand 320 505 IPR011992 -
Phco10g00702 698 Pfam Sodium/calcium exchanger protein 546 689 IPR004837 GO:0016020|GO:0055085
Phco10g00702 698 Pfam Sodium/calcium exchanger protein 86 254 IPR004837 GO:0016020|GO:0055085
Phco10g00702 698 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Phco10g00702 698 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00702 Phco-Chr10 8438088 8442171 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00702 10 8438088 8442171 Phco10g00702 10 8438088 8442171 ECH