Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00701 ATGAGAAACATTTCGAAAACACCATACTCTATATTTCTCCTTTTGTTAGCAACAACATTTAGGGTTCATGGTCGCCATCTGCCAGAACTAGTTTCAGATGGTGTTCACAAAGTTCAACACAACGAAACTTCTTACTTAGTCCTCAAAGGAATTGATGATGAATCCTCTGAGGAGCACTGCAAACAAATGTATGGCTTCTTGCCATGCACAGACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAGTATTTGCTGTTCCATGGAGAATCATATTTGGCTAAAGGAGGAGAACAAATCTTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTAGTGCTTTTCACATCCTAGGTGCCCTTCCAGAGTCCTTAATTCTTCTTGTTTCTGGACTTGTGAGCAATAAGGAGACAGCAAAAGAATATGCTTTCAGTGGGATTGGCTTATTGGCTGGATCATCCATTTTGCTTCTAACTGTAGTTTGGGGAAGCTGTGTCATTGTTGGCAATCAAGAATTTGAGCATCATTCTCCTCCTTCTAACTCACATCACAAAACTATTAAAACCTTCTTCACTGGTTTGTTATGGAATTACTACGGATTTGGAAACCAGTTACAGTGCAAGAATCATGATTTGCTCAGTGATACCATTTGCAATCATGCAAGTCCCAAATTTATTCCATTTCTCTTCGGGCTAAGAAACGTGACCTTACTAATTGCTCTCATCATTACCTCCATTCTTCTCTTCCTGTACTTCGTTTATCAGATTTTTGAACCATGGGTACAGAAAAGGAGATTGGAATATGTGAAACACGATCATTTAATATTGAGAATATTACAACATGTTCAAAAGAACACCCTGCAAAGAATCTTCACAAAGAATGGGACTCCAAATGTCAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAGGTTAAAGATCTTCTGCTCAAAAACAAAGTTACTGAAACCAATTTCGATGAGGAGAGAGAAGTAAAAGAGGTGTTACAAATTTTTGACCTGGATGGTGACAAAAAAATAAACAAAGAGGAATTTGTTAGTGGCTTCACAAAATGGCTTCATCAAACACAGCATGCTTTAGAGAAACAGTATTTTTCAATGAAATCACTGAAAAATATATATCAGGTTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATGTGAAATCTTGAAGCATGTTCAGAGTGATGTGATTGGTAGCCTTCTCACAGTAGATGGAAAACCTGATGAACATGCTATCAAAGGGTTGTTTGTGAAAATTGATCGCAATAGGGATAACTTCATTTCCCAATCTGAGTTGAGAGAACTAATCATGAACATCAAGTTTGTCAAAGCATCAATGGAAGTGGAAGAAGCAGTAGCTCTTGTCATTGAAGAACTAGACATTGATAACGACCGCATAATTAATGAGGATGAATTTGTTGCTGGGTTTCACAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCAGTGTCACATTCTGAGTCTCAAGAAGATATGTATCAGACCTGGGAAGAGGCTGACCTGGTGGTAGAAGAGAGGCAAAGCGATAAATCAACATGGGAATGGTTTAAGGCCATATTATATGTGGTGCTAGGAATTGCTATGCTATCCATTTTGGCAGAGCCTCTAACAGAAAGTGTCCACAACTTCTCTAACAGTGTAGGACTCCATCCATTCTTCATGTCATTTATTCTAGTCCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCAAGCCATAAGAAGCCAAGAACCACTTCTCTTGCCATTTCTGAGATTTATGGAGGGGTATTCATGAATAACATTCTTGGCTTCTTTGCAATCTCTGTTCTGATCAGTGTGGGACAAGTCACTTGGCAATATTCAGCTGAATTGCTGGTTGTTGCTATTGTTAGTGCTATAGCAGGCTTAACTGCAAGTTTTCTCTCCGTTTTTCCTCTATGGTCATCATTCTTTGCAATCCTTTTGTACCCATTGTCCTTGGTTTTGGTTTTTGTACTTGATCAAGTTCTTCGTTATAATTAA 2115 0.3868 MRNISKTPYSIFLLLLATTFRVHGRHLPELVSDGVHKVQHNETSYLVLKGIDDESSEEHCKQMYGFLPCTDNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFHILGALPESLILLVSGLVSNKETAKEYAFSGIGLLAGSSILLLTVVWGSCVIVGNQEFEHHSPPSNSHHKTIKTFFTGLLWNYYGFGNQLQCKNHDLLSDTICNHASPKFIPFLFGLRNVTLLIALIITSILLFLYFVYQIFEPWVQKRRLEYVKHDHLILRILQHVQKNTLQRIFTKNGTPNVSAIRRLYREIDQDGSSGISASEVKDLLLKNKVTETNFDEEREVKEVLQIFDLDGDKKINKEEFVSGFTKWLHQTQHALEKQYFSMKSLKNIYQVFGPWIENKRKEREGKKQLICEILKHVQSDVIGSLLTVDGKPDEHAIKGLFVKIDRNRDNFISQSELRELIMNIKFVKASMEVEEAVALVIEELDIDNDRIINEDEFVAGFHKWLSSTSAPAPVSHSESQEDMYQTWEEADLVVEERQSDKSTWEWFKAILYVVLGIAMLSILAEPLTESVHNFSNSVGLHPFFMSFILVPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVFMNNILGFFAISVLISVGQVTWQYSAELLVVAIVSAIAGLTASFLSVFPLWSSFFAILLYPLSLVLVFVLDQVLRYN 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00701 704 CDD EFh 439 504 IPR002048 GO:0005509
Phco10g00701 704 CDD EFh 302 367 IPR002048 GO:0005509
Phco10g00701 704 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Phco10g00701 704 ProSiteProfiles EF-hand calcium-binding domain profile. 297 332 IPR002048 GO:0005509
Phco10g00701 704 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Phco10g00701 704 FunFam Uncharacterized protein 257 365 - -
Phco10g00701 704 Gene3D - 254 379 - -
Phco10g00701 704 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Phco10g00701 704 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 59 696 IPR004713 GO:0006812|GO:0008324|GO:0016020
Phco10g00701 704 Pfam EF-hand domain pair 438 501 IPR002048 GO:0005509
Phco10g00701 704 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Phco10g00701 704 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Phco10g00701 704 Gene3D - 380 515 - -
Phco10g00701 704 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Phco10g00701 704 SUPERFAMILY EF-hand 301 504 IPR011992 -
Phco10g00701 704 SMART efh_1 301 329 IPR002048 GO:0005509
Phco10g00701 704 SMART efh_1 341 369 IPR002048 GO:0005509
Phco10g00701 704 SMART efh_1 478 506 IPR002048 GO:0005509
Phco10g00701 704 SMART efh_1 438 466 IPR002048 GO:0005509
Phco10g00701 704 Gene3D - 534 698 IPR044880 -
Phco10g00701 704 Pfam Sodium/calcium exchanger protein 552 695 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00701 Phco-Chr10 8398550 8405422 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00701 10 8398550 8405422 Phco10g00701 10 8398550 8405422 ECH