Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00671 ATGGCTTGTCTTTCTCTACCCAAAACTTCTTTTCTTCTTGCCTTATTGTTCTTCTCATCTTTCACCCTCATTGCGCATGCAATTGTTCCGCAGAATGAGACCTTCAAATTTGTGAACTCAGGTGAACTTGGACCCTTCATTGTTGAGTACGGTGGTGATTACCGAATGATAAGCATCTTCAACTCTCCTTTCCAAGTTGGTTTCTACAACACCACCCCAAATGCCTTCACTCTAGCTTTGCGTGTTGGACTCCAACGCTCAGAGCAACTCTTTAGATGGGTGTGGGAGGCCAATAGAGGCAACCCAGTTGGAGAGAATGCCACTTTTTCACTTGGAACTGATGGAAACCTTGTGTTGGCTGATGCTGATGCTAGAATTGTTTGGCAAACCAAAACTGCCAACAGGGGTGTTGTGGCCTTCAGGTTGCTTCCAAATGGTAACATGGTCCTCCTTGATGCACAGGGAAAGTTTGTTTGGCAGAGTTTTGACCACCCCACAGATACCCTTTTGGTTGGTCAGTATCTTAGAGCAAAAGGGCCATCCAAGTTGGTTAGTAGGCTTTCAGAGAAGGAGAATGTAGATGGACCTTACAGTTTGGTTTTGGAGCCTAAAGGGCTGTCCTTGTACTACAAGAGCAAGAATTCCCCTAGGCCAATTCTGTATTGGTTTTCATCTGATTGGTTCTCCATTGAACAAGGCTCCTTGGACAATGTCACCCTCACTTCTGATTCAGAGAGTTTTGAAATTGGATTTGATTACTTCGTGGCCAATTCTTCCACCAGTGGCAATAGAATCATCGGTAGGCCGGTGAACAATAGCACCATAACATACGTTAGGCTTGGAATTGATGGTAACATTAAATTCCACACTTACTTCCTTGATGTGCGTGATGGTGTTTGGCAAGTGACCTACACTCTATTTGACAGAGATTCTGATGAGAGTGAGTGTCAATTGCCTGAGAGATGTGGAAAGTTTGGGCTATGTGATGACAACCAATGCGTGGCTTGTCCATTGGAAAATGGACTATTTGGGTGGAGCAGCAATTGCACTTCCAAGACTGTGACATCATGCAAGGCAAATGAGTTTCACTACTACAAACTTGAAGGAGTTGAACATTACATGAGCAAGTACACTACAGGGGACCGCGTGAGTGAGAATAACTGTGGAAACAAATGCACTAAGGATTGCAAGTGTGTGGGTTATTTCTACCACCGAGAGAACTCCAGGTGTTGGATAGCTTATGATTTGCAAACCCTCACCAGAGTGACCAATTCCTCACACGTGGGGTATATTAAGGTGCCTAATCAGTAA 1311 0.4439 MACLSLPKTSFLLALLFFSSFTLIAHAIVPQNETFKFVNSGELGPFIVEYGGDYRMISIFNSPFQVGFYNTTPNAFTLALRVGLQRSEQLFRWVWEANRGNPVGENATFSLGTDGNLVLADADARIVWQTKTANRGVVAFRLLPNGNMVLLDAQGKFVWQSFDHPTDTLLVGQYLRAKGPSKLVSRLSEKENVDGPYSLVLEPKGLSLYYKSKNSPRPILYWFSSDWFSIEQGSLDNVTLTSDSESFEIGFDYFVANSSTSGNRIIGRPVNNSTITYVRLGIDGNIKFHTYFLDVRDGVWQVTYTLFDRDSDESECQLPERCGKFGLCDDNQCVACPLENGLFGWSSNCTSKTVTSCKANEFHYYKLEGVEHYMSKYTTGDRVSENNCGNKCTKDCKCVGYFYHRENSRCWIAYDLQTLTRVTNSSHVGYIKVPNQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00671 436 ProSiteProfiles Bulb-type lectin domain profile. 32 163 IPR001480 -
Phco10g00671 436 SMART blect_4 48 165 IPR001480 -
Phco10g00671 436 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 212 IPR036426 -
Phco10g00671 436 CDD PAN_AP_plant 353 434 - -
Phco10g00671 436 CDD B_lectin 48 165 IPR001480 -
Phco10g00671 436 Pfam D-mannose binding lectin 94 178 IPR001480 -
Phco10g00671 436 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 432 - -
Phco10g00671 436 PIRSF SLG 1 436 IPR035446 -
Phco10g00671 436 Gene3D - 52 163 IPR036426 -
Phco10g00671 436 ProSiteProfiles PAN/Apple domain profile. 357 435 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00671 Phco-Chr10 7872467 7873777 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00671 10 7872467 7873777 Phco10g00671 10 7872467 7873777 ECH