Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00669 ATGGCTACTTCCATTAACAGTGTTCTTGGGTGGAAATATTCCTCCTTTTTCTCACAATCTAATGCCTCCAACGCGGTTTCGCCTCCTTTCAAACCAAAACCCCCACTCTCCAAATTTTCTCTCACTTGCTCTGCCGCCTCCTCTTCCTCCGATCCACTACTGGTTAAGGCTGCCAGGGGAGATCCTGTTGGTCGTCCTCCAGCATGGATGATGCGACAGGCAGGAAGGTACATGGCTATTTACAGAAAGCTTGCTGAGAAATATCCATCCTTCAGAGAGAGGTCAGAGACAACTGACCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTCATTATCTTCTCGGACATCCTTACACCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGACATAAGGGGACCTGTTATTCATTCACCCATTCGTTCTGAGGAGGACTTGAAAACTTTGCATCCAATTGACTTTGACAAGCTTAAATTTGTTGGAGAATCACTTAAGATACTGCGCCAAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATTGTGGAAGGGGGTACAACACGCACGTATACAACCATTAAGAGCATGTGCCACACTGCTCCACATGTATTGAAGACTTTGCTTTCTCATTTGACGCAGGCAATAGCAGATTATGTTATTTTCCAAGTAGAGTCTGGGGCTCACTGCATACAAATATTTGACTCATGGGGTGGACAACTACCACCTGCTTTGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTACATTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGCCTTCTGGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGATCCTGCCTACTTATTCTCCCCTCTTGCTGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGGCCCAGACGGCACATCCTTAATCTAGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGACACACTTTTTCCAAACAATACTGCAAAAAACCCTAATCTAGTAACATAA 1224 0.4502 MATSINSVLGWKYSSFFSQSNASNAVSPPFKPKPPLSKFSLTCSAASSSSDPLLVKAARGDPVGRPPAWMMRQAGRYMAIYRKLAEKYPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGVDFDIEDIRGPVIHSPIRSEEDLKTLHPIDFDKLKFVGESLKILRQEVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLKTLLSHLTQAIADYVIFQVESGAHCIQIFDSWGGQLPPALWERWSKPYIKEIVHLVKKKCPEVPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLAALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFDTLFPNNTAKNPNLVT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00669 407 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 186 202 IPR000257 GO:0004853|GO:0006779
Phco10g00669 407 Gene3D - 42 391 IPR038071 -
Phco10g00669 407 CDD URO-D 56 388 IPR006361 GO:0004853|GO:0006779
Phco10g00669 407 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 67 76 IPR000257 GO:0004853|GO:0006779
Phco10g00669 407 FunFam Uroporphyrinogen decarboxylase 43 391 - -
Phco10g00669 407 NCBIfam uroporphyrinogen decarboxylase 54 387 IPR006361 GO:0004853|GO:0006779
Phco10g00669 407 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 390 IPR006361 GO:0004853|GO:0006779
Phco10g00669 407 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 46 391 - -
Phco10g00669 407 Pfam Uroporphyrinogen decarboxylase (URO-D) 53 388 IPR000257 GO:0004853|GO:0006779
Phco10g00669 407 SUPERFAMILY UROD/MetE-like 53 389 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00669 Phco-Chr10 7857286 7860380 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00669 10 7857286 7860380 Phco10g00669 10 7857286 7860380 ECH