Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00245 ATGCCTCCGTGCCCATATCCCACATCTCAGTGGACATGCCCTACCGGTCCTCCGAAGCCAGGCATCCTAGGACAGCGTCCTCAGGCATATATTGCTACTACATCTCCGACACCGACAGATATCGAGGCAGCTATGCACACCATGTCTCTCCAGACTCCTGACGCTCCGTGGAACATGGATACTGGCGCATCAACTCACACATCAGCATCACAAGGGATGCCTCTCATGAGATGTGACAGCCTTGGCGATCTATATCCAGTCACCACCTCCCCAAGTTTTGTTGGTCTTACGTCTAGTCTTTGGCACGGTCGCCTTGGTCATCCTGGCGCCCACGCTTTAAATTCCCTTCGCAATAATAAGTTCATATGTTGTGAACCTTTTAATTCTTCTGTTATTTGTGACTCTTGTGTTTTAGGCAAGCAGGTTAAATTGCCATTTCTTAACTCTCAAACAATAACTTTGATGCCCTTTGATATTTTACATAGTGATTTGTGGACTTCTCCAATTTTAAGTTCTGCTGGTCATAAATATTATGTTCTCTTCTTAGATGATTTTACAAATTTCTTGTGGACCTTCCCTATTAGTCGAAAATCTCAAGTTTTTGAAATGTTTCAGTCACTTACTAATCTTATTCAAACACAATTTTCGCTAAGTGTAAAATCTTTTCAGTGTGACAATGGCGGTGAATATAATAATGAGCTATTCCAACAATATTGCGCCAACCATGGTCTTGTTTTTCGCTTCTCTTGTCCTCACACATCCTCACAAAATGGGAAAGCCGAACGAAAAATAAGAACCATTAATAATATGATGCGCACCATGCTAGCCCATTCTTCTGTTCCCCAATCATTTTGGCATCATGCCCTTCACATGGCAACTTACCTGTTAAATATTCTTCCCTGCAAAACACTTCAAAATAAGTCACCTACACAACTCCTATACCATCGTGATCCCACCTACACACACTTACGAGTCTTTGGTTGCCTATGTTATCCGTTACTCCCGTCATCTACCATTCACAAGCTACAACCTCGCTCTACCCCGTGTGTCTTTTTGGGTTATCCTTCCTATCATAGAGGTTACAAATGCTTTGATTTGTCAAACAGAAAATTAATAATTTCGAGGCATGTCATCTTCGATGAAACTCAATTTCCCTTCACCAAGATACACTCACCCTCACCCCACTCTTATCACTTTCTAACCGATGACCCACACCCCTACCTCATCCATCAGTGGCAAAATCAAATACCACCACCAGCCACACATAACCACTTACCAACCATCACTGACCAGCCACCCCCATCAACTAACCTACAATCATCGACCCTTACCCCTCCAATCAACCCACCCACTACAATCTCCAATAGCTCAATCCCACCAATTCAACCACCACCTACACGTACTATCACCACCCGTAGTATGAAAGGCATTACCAAACCCCGTAAACTATTTAACTTATCAATTTCTCACTCAAACCACTCCATCTCTCCATTACCCAAAAATCACAAAATAGCCCTATCAGACCCCAATTGGAAATCCGCAATGAAATCTGAATTTGATGCTCTTATTAGAAATAAGACGTGGGATTTAGTTCCTCGTCCTTGTGATGCCAATCTCATTCGATGCATGTGGATTTTCAAACACAAGAAAAATTCTGATGGCTCCTTTGAGCGCTATAAGGCTCGCCTTGTTTGTGATGGCAGGTCACAGGTTGCAGGTGTGGATTGTGATGAGACTTTCAGCCCGGTGGTCAAACCGGCTACTATTCGAACAGATCTCACCATTGCTCTCTCTAAATCCTGGCCCATTCATCAACTGGATGTCCAGAACGCTTTTCTACATGATCTTGGTCCGTTGAGTTACTTTCTGGGCATCGCTGTCTCTCGCCACCCTGGCGGCATTTTTCTCAGTCAAAGCACCTATGCTTCTAAAATCCTTGAACGTGCTGGCATGACATCCTGCAAACCGACTGCCACACCTGTTGATACCAAACAGAAACTCAGCACGTCATCTGGCACTCCTTATGAGGATCCCTCTCTCTATCGCAGTCTTGCAGGAGCCTTACAGTACCTCACATTCACTAGACCTGACATCTCATATGCGGTTCAGCAAATCTGTCTCCACATGCATGCACCCAAGACAGAACACATGCTTGCTCTCAAACGCATCCTTCGGTATGTCCAGGGCACCATACACTTTGGTCTACATTTATCACCATCCCCCATTACAAAACTCATCTCCTACACTGACGCTGGTTGGGGTGGATGTCCTGACACCAGACGCTCCACATCTGGGTACTGTGTTTTTCTGGGTGACAACCTTATATCTTGGTCTTCCAAAAGACAGCCCACTCTCTCTCGTTCCAGTGCAGAAGCAGAATACAGAGGTGTTGCTAATGTTGTATCTGAGTCATGTTGGCTTCGCAATCTCTTACTAGAGCTCCATTTTCCTATTCCTCAGGCCACTTTGGTGTATTGTGACAATGTCAGTGCAATGTATCTCTCTGGTAATCCTGTTCAACATCAGCGTACCAAGCACATTGAAATGGACATTCACTTTGTACGGGAAAAAGTAGCTCGTGGTCAGGCACGCGTACTTCATGTTCCATCTCGACATCAGATTGCAGATATCTTCACAAAAGGACTTCCTCGTATTCTCTTCGATGATTTTCGGACCAGTCTCAGCGTCTGTGAACCTCCCGCTTCGACTGCGGGGAGTGATGATATTGAGATTATGTTTATGCGCATGGCTGTGTGGATTACACAGTGGTGTGGTATGACAGGTGCAGGTCTCTGGATGCTAAGTTCAACGCATGAGTCTTCCGGAAGTAGTGTCAAGTGTCTATGTGTGATGGCTCTTTCTGAGCAACACACAAACCCTGTTCCCTTCTCTTCTTCTACCCTCAGTTTTGCACTGAAAATGGCACCTACTCTCTCTTCAGCACTCCTTTTGGCTTTGCTATGTGCTGCTTCGGCTTTTGCTGCCCTTGAGCCCAGAGTACCAGAAGCTTACCTTCAAAATGGGAACTTTGAGGAGCAGCCGAACCCCAAATACCTGAAGAAAACAAAGCTCGTTGGGAAATTTGCTTTGCCCAAATGGGAGATCAGTGGTCTGATTGAGTATGTCTCTGGGGGACCCCAACCTGGTGGCATGTTCTTCCCAGTTACTCATGGAATTCATGCTGTGAGACTTGGCAATGAGGCCTCGATCTCCCAAACTATCAAGGTCAAACAGGGTCAACTCTATGCTCTAATTCTTGGGGCCTCAAGGACTTGTGCACAAGATGAAGTATTGCGAATCTCTGTGCCTCCACAGACTGGTGATGTTCCGTTGCAGACCCTGTATAACCTCAATGGTGATGTTATTGCTTGGGGGTTTAAGGCCACTTCTAATGTTGTCAAAGTGACTTTCCACAACCCTGGAGTTCAAGAAGATCCAGCTTGTGGGCCACTTTTGGATGCCATTGCTATCAGGGAGTTCTACCCTCCAATGCCTACTAGAGTTAACTTGGTGAAAAATCCTGGCTTTGAGGAGGGTCCATTCCCCATTTTCAACTCTACTAACGGTGTTCTGCTCCCTCCTCAACAACAAGATGGGTTCTCCCCACTTCCTGGTTGGATCATTGAGTCCCTCAAGGCTGTGAAGTTCATTGATTCGAAGCATTTCAATGTCCCATTTGGGCTGGGAGCAGTGGAGCTTGTGGCAGGCAGGGAAAGTGCCATTGCCCAAGTCATCAGAACAGTTACCAACAAAGTCTACAACATCACATTTTCAGTTGGAGATGCGAAAAATGGGTGCAATGGATCCATGATGGTTGAAGCATTTGCTGCTAAAGATACCTTCAAAGTTCCTTTCAAATCTGAAGGAAAGGGCACATTCAGGACTGTGAGTTTCAAGTTCAAAGCTATTGCACAGAGAACCAGACTCACTTTCTACAGCTCCTTCTATCATACCAGAAGTGATGATTATGGTTCTCTTTGTGGCCCTGTTATTGATCAAGTTATAGTGTTCCCTGTCGCCTAA 4023 0.4522 MPPCPYPTSQWTCPTGPPKPGILGQRPQAYIATTSPTPTDIEAAMHTMSLQTPDAPWNMDTGASTHTSASQGMPLMRCDSLGDLYPVTTSPSFVGLTSSLWHGRLGHPGAHALNSLRNNKFICCEPFNSSVICDSCVLGKQVKLPFLNSQTITLMPFDILHSDLWTSPILSSAGHKYYVLFLDDFTNFLWTFPISRKSQVFEMFQSLTNLIQTQFSLSVKSFQCDNGGEYNNELFQQYCANHGLVFRFSCPHTSSQNGKAERKIRTINNMMRTMLAHSSVPQSFWHHALHMATYLLNILPCKTLQNKSPTQLLYHRDPTYTHLRVFGCLCYPLLPSSTIHKLQPRSTPCVFLGYPSYHRGYKCFDLSNRKLIISRHVIFDETQFPFTKIHSPSPHSYHFLTDDPHPYLIHQWQNQIPPPATHNHLPTITDQPPPSTNLQSSTLTPPINPPTTISNSSIPPIQPPPTRTITTRSMKGITKPRKLFNLSISHSNHSISPLPKNHKIALSDPNWKSAMKSEFDALIRNKTWDLVPRPCDANLIRCMWIFKHKKNSDGSFERYKARLVCDGRSQVAGVDCDETFSPVVKPATIRTDLTIALSKSWPIHQLDVQNAFLHDLGPLSYFLGIAVSRHPGGIFLSQSTYASKILERAGMTSCKPTATPVDTKQKLSTSSGTPYEDPSLYRSLAGALQYLTFTRPDISYAVQQICLHMHAPKTEHMLALKRILRYVQGTIHFGLHLSPSPITKLISYTDAGWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPIPQATLVYCDNVSAMYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRILFDDFRTSLSVCEPPASTAGSDDIEIMFMRMAVWITQWCGMTGAGLWMLSSTHESSGSSVKCLCVMALSEQHTNPVPFSSSTLSFALKMAPTLSSALLLALLCAASAFAALEPRVPEAYLQNGNFEEQPNPKYLKKTKLVGKFALPKWEISGLIEYVSGGPQPGGMFFPVTHGIHAVRLGNEASISQTIKVKQGQLYALILGASRTCAQDEVLRISVPPQTGDVPLQTLYNLNGDVIAWGFKATSNVVKVTFHNPGVQEDPACGPLLDAIAIREFYPPMPTRVNLVKNPGFEEGPFPIFNSTNGVLLPPQQQDGFSPLPGWIIESLKAVKFIDSKHFNVPFGLGAVELVAGRESAIAQVIRTVTNKVYNITFSVGDAKNGCNGSMMVEAFAAKDTFKVPFKSEGKGTFRTVSFKFKAIAQRTRLTFYSSFYHTRSDDYGSLCGPVIDQVIVFPVA 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00245 1340 SUPERFAMILY DNA/RNA polymerases 525 853 IPR043502 -
Phco10g00245 1340 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 525 614 IPR013103 -
Phco10g00245 1340 MobiDBLite consensus disorder prediction 452 466 - -
Phco10g00245 1340 Pfam Protein of unknown function (DUF642) 1169 1336 IPR006946 -
Phco10g00245 1340 Pfam Protein of unknown function (DUF642) 1004 1158 IPR006946 -
Phco10g00245 1340 PANTHER GAG-POL-RELATED RETROTRANSPOSON 640 904 - -
Phco10g00245 1340 SUPERFAMILY Ribonuclease H-like 152 313 IPR012337 -
Phco10g00245 1340 Pfam GAG-pre-integrase domain 97 141 IPR025724 -
Phco10g00245 1340 MobiDBLite consensus disorder prediction 419 451 - -
Phco10g00245 1340 Gene3D - 147 325 IPR036397 GO:0003676
Phco10g00245 1340 FunFam DUF642 family protein 1165 1336 - -
Phco10g00245 1340 CDD RNase_HI_RT_Ty1 748 885 - -
Phco10g00245 1340 MobiDBLite consensus disorder prediction 419 471 - -
Phco10g00245 1340 ProSiteProfiles Integrase catalytic domain profile. 152 317 IPR001584 GO:0015074
Phco10g00245 1340 Gene3D - 1164 1325 - -
Phco10g00245 1340 Pfam Integrase core domain 156 253 IPR001584 GO:0015074
Phco10g00245 1340 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00245 Phco-Chr10 2261742 2271130 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00245 10 2261742 2271130 Phco9g00154 9 1029313 1030976 ECH
Phco10g00245 10 2261742 2271130 Phco10g00245 10 2261742 2271130 ECH