Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03955 ATGGCAACTGAAATGCAGTGGGCTAAGAATAACAAATCTGCTCCTGTTGTTGATGAGGATAGCATGGACCCGACTCAATACCTTGAGAATAGGCTGAAGTATCTTGCAGTTCAAAAGGCAGAAGGCAGAAATCCATATCCCCACAAATTCTTTGTCAATATGTCCCTTGATGAATACATTAAGGAATATGGAGGTTTAAGTGAAGGGCAGCACCTTGAGGATGTTTCTGCGTCTTTGTCTGGTCGGATCATGCACAAGCGCACATCTGGTTCTAAGCTTGTCTTTTATGACCTGCATGGTGGTGGTTTCAAGGTCCAGGTTATGGCTGATGCGAGTAAATCAGACTTGAATGAGGCTGACTTTTCCAAATTCCATTCTAATGTGAAGCGTGGTGACATAGTCGGTATCACTGGATTTCCCGGAAAAAGTAAGAAGGGTGAACTTAGTATTTTTCCGAAGACTTTTGTGGTGCTGTCTCATTGTTTGCATATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTGCTGATAATGTGAATTTGAAGATAAATCCATGGGTACCAGGAAGTACCAGGAATCCTGAAATATATGTTTTGAAGGATCAGGAGACTAGATATCGCTTACGCTATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTTAAGACCAGATCTAAAATCATTTCTTACATTAGGAGCTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATAAACATGGTTGCTGGTGGAGCTGCAGCACGCCCATTTGTAACCCATCACAATGACCTTAACATGAGGCTATTCATGAGGATTGCTCCAGAACTGTATCTCAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGCAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACTTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATATAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAGCTTACAAAGGGAAGCTATAAAATCAAGTATCATGCTGATGGGATTGACAAGGAACCTATTGAAATTGATTTTACTCCACCTTTCAGAAGGATTGATATGATTGAAGAGTTAGAGAAGATGGCAGGCCTCAGTATTCCCAAAGACCTGTTGAGTGAGGAAGCTAATCAATATTTGAAGGACGCATGCTTGAAGTATGAGATCAAATGTCCACCTCCTGAGACAACTGCACGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAATCGTGTGTAAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCTTTAGCAAAATGGCACAGATCAAGGCCAGGTCTGACCGAACGTTTTGAATTATTTATTAATAAACATGAGCTTTGCGATGCATATACTGAACTGAATGACCCTGCAGTACAACGACAGAGATTTGCCGAACAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGACCTTAGATGAAACATTTTGCAGGGCTCTGGAGTATGGCTTGCCACCTACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACCATGTTATTGACAGATTCGCAGAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGA 1665 0.4144 MATEMQWAKNNKSAPVVDEDSMDPTQYLENRLKYLAVQKAEGRNPYPHKFFVNMSLDEYIKEYGGLSEGQHLEDVSASLSGRIMHKRTSGSKLVFYDLHGGGFKVQVMADASKSDLNEADFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAAADNVNLKINPWVPGSTRNPEIYVLKDQETRYRLRYLDLMLNPEVREIFKTRSKIISYIRSFLDDLDFLEVETPMINMVAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDITEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTPPFRRIDMIEELEKMAGLSIPKDLLSEEANQYLKDACLKYEIKCPPPETTARLLDKLVGHFLEESCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFINKHELCDAYTELNDPAVQRQRFAEQLKDRQSGDDEAMTLDETFCRALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03955 554 PIRSF LysRS2 1 554 IPR034762 GO:0004824|GO:0005524|GO:0006430
Phac9g03955 554 Gene3D Bira Bifunctional Protein; Domain 2 196 554 IPR045864 -
Phac9g03955 554 MobiDBLite consensus disorder prediction 1 20 - -
Phac9g03955 554 Hamap Lysine--tRNA ligase [lysS]. 30 553 IPR002313 GO:0004824|GO:0005524|GO:0006430
Phac9g03955 554 CDD LysRS_core 215 552 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phac9g03955 554 Pfam tRNA synthetases class II (D, K and N) 200 550 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phac9g03955 554 Pfam OB-fold nucleic acid binding domain 78 154 IPR004365 GO:0003676
Phac9g03955 554 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 222 552 IPR006195 -
Phac9g03955 554 CDD LysRS_N 78 212 IPR044136 GO:0000166
Phac9g03955 554 SUPERFAMILY Nucleic acid-binding proteins 22 166 IPR012340 -
Phac9g03955 554 SUPERFAMILY Class II aaRS and biotin synthetases 200 551 IPR045864 -
Phac9g03955 554 Gene3D - 25 167 IPR012340 -
Phac9g03955 554 FunFam Lysine--tRNA ligase 196 554 - -
Phac9g03955 554 PANTHER LYSYL-TRNA SYNTHETASE 10 554 - -
Phac9g03955 554 NCBIfam lysine--tRNA ligase 192 553 IPR002313 GO:0004824|GO:0005524|GO:0006430
Phac9g03955 554 PRINTS Lysyl-tRNA synthetase signature 435 451 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phac9g03955 554 PRINTS Lysyl-tRNA synthetase signature 237 247 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phac9g03955 554 PRINTS Lysyl-tRNA synthetase signature 282 295 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phac9g03955 554 PRINTS Lysyl-tRNA synthetase signature 253 269 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phac9g03955 554 PRINTS Lysyl-tRNA synthetase signature 300 317 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phac9g03955 554 FunFam Lysine--tRNA ligase 24 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03955 Phac-Chr9 38066712 38082497 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03955 K04567 - gmx:100785660 1049.65