Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01472 ATGCATACGCATGTGTGGAAGCAGATCAGAGACAGAGAAGGTGGGAGAGTGCATGCGAACCATTTCGCCAATCGCATAAAATCTTATCGCACTTCGCAGCTCCAATTAGCGAATCACAAAGACATCGTGTCCCCTCACAAGGGCGCTATCAACTCCCTTCAGATTGATTCGACAGAGGGAAGGTATCTGCTCTCCGCCGCCTCCGATGCCTCGGTAGCCGTCTACGACGTTCAACGATCCGCCTCCGCCGCTTCCGAAGCAGCGGCCGCCTTCTCCAAACACAGGTGCTTATTTGTCGTTGACAAGCAGCACCGACAGGCCCACAAATATGCCGTCTCCACAGCCATATGGTATCCCATTGACACCGGTTTGTTCGTCACTGGCTCATACGATCACCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTGAACTTCAAAATGCCGGGAAAGGTGCACAGGACTGCAATGTCTAATTTGTCAACGTCTCACATGCTTATCGCTGCTGGCACTGAGGATGTCCAAGTTCGCCTCTGTGATATTGCTTCCGGGGCTTTTGCTCACACTTTGTCCGGTCACCGTGATGGTGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTATTGGTTACCGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGGCGTGCTGGCTGTTTCCAAGTTTTAGATCAATCTCAGACTCAGTTTGGAAGGCGCCCACCTATACTGAAACGGTCCACGATAACTAAGGATTCAAGTACAAAAATGCGTGGTGCCCAAAAGAAACATGCTAATGGAAGTGGTAGCAGACAACATCCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGGTTACATCCTGGAATGCTGTCTACTCAGGATCGGGCGACTGCTCATTATGGTGCCGTGATAGGGTTAAAGGCAACAGAGGATGGCATGTATCTGCTAAGTGCAGGTTGTTAA 987 0.4975 MHTHVWKQIRDREGGRVHANHFANRIKSYRTSQLQLANHKDIVSPHKGAINSLQIDSTEGRYLLSAASDASVAVYDVQRSASAASEAAAAFSKHRCLFVVDKQHRQAHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRTAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQFGRRPPILKRSTITKDSSTKMRGAQKKHANGSGSRQHPIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVIGLKATEDGMYLLSAGC* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01472 328 PRINTS G protein beta WD-40 repeat signature 212 226 IPR020472 -
Phac9g01472 328 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Phac9g01472 328 PRINTS G protein beta WD-40 repeat signature 63 77 IPR020472 -
Phac9g01472 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 227 - -
Phac9g01472 328 Gene3D - 6 328 IPR015943 GO:0005515
Phac9g01472 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Phac9g01472 328 Pfam WD domain, G-beta repeat 107 138 IPR001680 GO:0005515
Phac9g01472 328 Pfam WD domain, G-beta repeat 190 225 IPR001680 GO:0005515
Phac9g01472 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 85 IPR001680 GO:0005515
Phac9g01472 328 MobiDBLite consensus disorder prediction 250 294 - -
Phac9g01472 328 ProSitePatterns Trp-Asp (WD) repeats signature. 212 226 IPR019775 -
Phac9g01472 328 SUPERFAMILY WD40 repeat-like 43 327 IPR036322 GO:0005515
Phac9g01472 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 147 IPR001680 GO:0005515
Phac9g01472 328 SMART WD40_4 36 76 IPR001680 GO:0005515
Phac9g01472 328 SMART WD40_4 93 138 IPR001680 GO:0005515
Phac9g01472 328 SMART WD40_4 185 225 IPR001680 GO:0005515
Phac9g01472 328 FunFam Transducin/WD40 repeat-like superfamily protein 6 273 - -
Phac9g01472 328 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 6 327 IPR042238 GO:0006283
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01472 Phac-Chr9 12053856 12058171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01472 46 241 Miscellaneous Gene Families AT5G08390 21.212 9.33e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01472 K10570 - gmx:100815581 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g01472 9 12053856 12058171 Phac9g01472 9 12053856 12058171 ECH