Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01279 ATGGATAATTCCACCCAAGACTCCCACCTTCGATCGGAGAACTCGGTGACCCATGAATCGCCCTACCCAATCTACGCCATGGCCTTCTCACCCTCCCACCCCCACCGTCTCGCCCTCGGAAGTTTCATCGAAAAATACACCAACCGCATCCACATCCTCTCCTTCCACCCCGACACCCTTTCCCTCACCCCACACCCCTCCCTCTCCTTCGACCACCCCTACCCTCCAACCAAGCTCATGTTCCACCCTCGCAAACCATCCCCCTCCTCCTCCTCCGACCTCCTAGCAACCTCCGGCGACTACCTCCGCCTCTGGGACGTCCGCGAAAACTCCGTCGAGCCCCTCTCCCTCTTCAACAACAGCAAGACCAGCGAGTTTTGCGCGCCCCTCACCTCCTTCGACTGGAACGACATCGACCACAATCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAACGCACCGTCGTCGAGACGCAGCTCATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGTGAGGCAAGAGTCTTCGCCTCCGTCTCAGCCGACGGCTCCGTTCGAATCTTCGATTTGCGTGACAAAGAGCACTCCACCATCATCTATGAAAGCCCTCACCCCGACACCCCTTTGCTGCGTTTGGCTTGGAACAAGCAAGACCTCAGGTACATGGCTACCATCTTGATGGATAGTAATAAAGTTGTGATCTTGGATATTAGGTCCCCCACTACCCCTGTGGCGGAGTTAGAGAGGCATCGTGGGAGTGTGAATGCCATTGCTTGGGCTCCTCATAGCTCCACGCATATTTGTTCTGCTGGGGATGATACTCAGGCTCTTATCTGGGAATTGCCCACGCTGGCTGCTCCCTCTGGGATTGATCCCATGTGCATGTATTCTGCTGGCTGTGAAATCAACCAGCTGCAGTGGTCCGCGGCTCAGCCTGATTGGATTGCTATTGCTTTTGCCAACAAGGTGCAGCTTTTGAAGGTTTGA 1011 0.5628 MDNSTQDSHLRSENSVTHESPYPIYAMAFSPSHPHRLALGSFIEKYTNRIHILSFHPDTLSLTPHPSLSFDHPYPPTKLMFHPRKPSPSSSSDLLATSGDYLRLWDVRENSVEPLSLFNNSKTSEFCAPLTSFDWNDIDHNRIGTSSIDTTCTIWDIERTVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTTPVAELERHRGSVNAIAWAPHSSTHICSAGDDTQALIWELPTLAAPSGIDPMCMYSAGCEINQLQWSAAQPDWIAIAFANKVQLLKV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01279 336 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Phac9g01279 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 289 IPR001680 GO:0005515
Phac9g01279 336 SMART WD40_4 159 197 IPR001680 GO:0005515
Phac9g01279 336 SMART WD40_4 248 288 IPR001680 GO:0005515
Phac9g01279 336 SMART WD40_4 63 106 IPR001680 GO:0005515
Phac9g01279 336 SMART WD40_4 111 156 IPR001680 GO:0005515
Phac9g01279 336 SMART WD40_4 9 54 IPR001680 GO:0005515
Phac9g01279 336 Gene3D - 126 335 IPR015943 GO:0005515
Phac9g01279 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 206 IPR001680 GO:0005515
Phac9g01279 336 Gene3D - 2 125 IPR015943 GO:0005515
Phac9g01279 336 FunFam WD repeat-containing protein LWD1 11 335 - -
Phac9g01279 336 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515
Phac9g01279 336 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Phac9g01279 336 SUPERFAMILY WD40 repeat-like 20 331 IPR036322 GO:0005515
Phac9g01279 336 PANTHER WD REPEAT CONTAINING PROTEIN 5 336 IPR045159 -
Phac9g01279 336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01279 Phac-Chr9 10107985 10115961 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01279 K11805 - gmx:100804923 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g01279 9 10107985 10115961 Phac9g01279 9 10107985 10115961 ECH