Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01086 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCGAGGACTCCATTGGGATTGAACACAAAGTTTTCCAGTAATCGTCTGAAGAGACCTTTAATTATAGCATTTAAAGGGGATAAACACGATGACTCAGCTTTGGTTGCAACTCAAGAGAAAATCCCTGTGCCCGTTGAGACATCCAAGACGCAGAAGAAAAAGATGGGGAAAGCTAAGAAACTTCCTAAGAGAGAAAGGGTTGCCTCTGTGGAGGAAAATTCCCCAACTTCCTTGGACGTGGACTATAATGAAGCTGCTGCTATGCTTGAAAATATATACAAACTCAGCCCTGCTTCTGATACTGCTAATGCAGAATGTATGGATGGTAAAATCAAAAGGGTCTCCCGGAGAAGGAAGAAGATTGTTGACGATTGTGAAGAAAAGGATGTAAACGATGATAGGGTGGTCAGAAACCAGAACAAGAAAGCTAAACGGTTGGGTCTTGATCAGAGGATTTCATTAAAGAGTAACACAGATGGGGACGAAGTCGTTCCCACACGAAAGAAAAAAAATGCTAACAATAGCATTGAGAAGATTGAAGAACTTATTAGGGAATATTCTGCATCAACTGATTTTGTCGGTATGGACTGGAGAAGAATGAAAATACCTCCTGTTCTTTCTTCCTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTGTGAAGACAATACTTAAAGTGAAAGAAGATTTACAGAAGGAGCTAGCAAGAGAACCTGCTGATGGAGAACTAGCCAATGCAACAAACATGAGCATTGCTCATGTAAAGAAAGCACTGGAGGTTGGCCAAGCTGCAAGAAACAAACTCATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAAATATTTTACAGATTTTTCAAGTGGCTCTAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATGACGGCAATTGATCGCTTTGAGCCAAACAGAAGATTTCGGCTATCAACATATAGTTTATTTTGGATAAGACATGCTATCACTCGTTCAATGACCCTCTCAAGCTTCACACGGGTTCCATTTGGACTTGAATCGGTTCGAGCAGAAATCCAAAAAGCTAAAACTAAGTTAACATTTGAGCTTCAGAGATCACCAACGGAGGAAGAAATAATAGAAAGAGTTAAAATATCCCCGGAAAGATACCATGACGTAATGAAGGCATCAAAATCCATTCTTTCGCTGAACTCGAGGCATATAACTACACAGGAGGAGTTCATTAACGGGGTCGTTGATGATGATGGTGTTAATGGTGATAATAGTAAGCAACCTGCTCTACTAAGACTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGGAAGGGTGACAGAACGTTGGGAGAAATTGCTAGGAACTTGAATATATCAAGGGAAATGGTAAGAAAGCACGAAGTGAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 1542 0.4118 MGVVTVSSSAARTPLGLNTKFSSNRLKRPLIIAFKGDKHDDSALVATQEKIPVPVETSKTQKKKMGKAKKLPKRERVASVEENSPTSLDVDYNEAAAMLENIYKLSPASDTANAECMDGKIKRVSRRRKKIVDDCEEKDVNDDRVVRNQNKKAKRLGLDQRISLKSNTDGDEVVPTRKKKNANNSIEKIEELIREYSASTDFVGMDWRRMKIPPVLSSSEHAWLFKLMQPVKTILKVKEDLQKELAREPADGELANATNMSIAHVKKALEVGQAARNKLIKHNLRLVLFVINKYFTDFSSGSRFQDLCQAGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAITRSMTLSSFTRVPFGLESVRAEIQKAKTKLTFELQRSPTEEEIIERVKISPERYHDVMKASKSILSLNSRHITTQEEFINGVVDDDGVNGDNSKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIARNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01086 513 PRINTS Major sigma-70 factor signature 306 319 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 PRINTS Major sigma-70 factor signature 452 464 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 PRINTS Major sigma-70 factor signature 330 338 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 PRINTS Major sigma-70 factor signature 488 499 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 PRINTS Major sigma-70 factor signature 473 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 Pfam Sigma-70, region 4 448 501 IPR007630 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 Pfam Sigma-70 region 2 279 344 IPR007627 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 506 IPR013324 -
Phac9g01086 513 NCBIfam sigma-70 family RNA polymerase sigma factor 275 501 IPR014284 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 Gene3D - 226 268 IPR036388 -
Phac9g01086 513 Gene3D - 352 404 IPR036388 -
Phac9g01086 513 Pfam Sigma-70 region 3 233 274 IPR007624 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 Pfam Sigma-70 region 3 364 431 IPR007624 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 Coils Coil 179 199 - -
Phac9g01086 513 Coils Coil 358 378 - -
Phac9g01086 513 Gene3D - 436 513 IPR036388 -
Phac9g01086 513 CDD Sigma70_r4 442 500 - -
Phac9g01086 513 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 197 346 IPR013325 GO:0003700|GO:0006352|GO:0006355
Phac9g01086 513 Gene3D - 269 347 - -
Phac9g01086 513 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 85 512 - -
Phac9g01086 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 354 425 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01086 Phac-Chr9 8337281 8340767 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01086 K03093 - gmx:100812580 833.558