Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00985 ATGTATCATGCTACCTTACAGTACAAAGAAAGTGAATACAATGGTATGGAATTGCATGGTCTGGCACGAACGCTTCAGTCCTGGTCCACCATCAGTGAAGGGAGGCAACTCCACGTGGCATTCCTTAAAACCGGCATTCTGAATTACTCCATCACCGTCGCAAACCGTCTTCTTCAGCTATACACCCGCTGCGGTTTTCTCCGTGATGCGTCTCACTTGTTCGACGAAATGCCCAGTACAAACTCTTTCTCTTGGAACACCCTCGTCCAAGCACACCTCAACTCAGGCCACACCCACAATGCCCTCAACTTGTTCAATGTCATGCCTCACAAGACTCACTTCTCATGGAACATGGTCGTTTCCTCATTCGCCAAGTCCGGACGCCTCCAACTAGCCTACTCACTATTCAATGCCATGCCCTCAAAGAACCACCTTGTCTGGAATTCCATAATTCATAGTTATTCCCGACATGGGCATCCAGGGAAAGCGCTTTTCCTCTTCAAGAGCATGAACTCTGACCCTGCACAGATAATGTACCGTGATGCTTTTGTGCTGGCGACTGTCCTCGGCGCCTGTGCTGACCTGCTGGCTCTCAACTGTGGGAAACAAGTTCATGCACGTGTTTTCGTTGATGGTCTTGGGTTGGATCTTGACAGGGTTTTGTGCAGCTCGCTGATTAACTTGTATGGGAAGTGTGGTGATTTGGATGGTGCTGCTCGCGTTATTAGTTCCGTGAGGGAAGTGGATGAGTTCTCTTTGTCAGCTTTGATATCTGGTTATGCAAATGCTGGCAGAATGAGGGAGGCGAGAAGGGTTTTCGATATTAAGGTTGATCCATGTGTTGTGCTGTGGAATTCGATTATTTCGGGTTATGTGTCCAACGGTGAGGAGATGGAAGCAGTGAATCTTTTCTCTGCAATGCTTAGGAATGGTGTGAGGGGAGACGTGTCTACTGTTGCTAATATTTTGAGTGCAGGCAGTGGTTTACTTGTTGTAGAACTTGTTAGGCAAATGCATGCCTACGGTTTTAAAGCTGGGGCGACTCATGATATTGTGGTTGCTAGTGCTCTGCTTGATGCTTACTCCAAATGTCAAAGCCCTTGTGAAGCTTGCAAGTTGTTTAGTGAGCTCAAAGCTTATGATACCATTTTACTTAATACTATGATCAGTGTGTATTCCAATTGTGGAAGGATAGAAGATGCCAAATGGATTTTTAATACAATGCCTAGGAAAACCTTAATTTCATGGAATTCAATCCTAGTTGGCCTGACCCAGAATGCGTGTCCAAGTGAAGCGTTAGATGTTTTTTGTCAGATGAATAAGCTGGACTTAAAAATGGACAAGTTTAGTTTTGCTAGTGTTATCAGTGCTTGTGCCAGCAAATCATCCCTTGAACTTGGTGAGCAGGTATTCGGTAAAGCTGTTACCATAGGACTCGACTCCGACCAGATTATTTCTACCTCCCTTGTTGATTTTTACTGTAAATGTGGTTTTGTTAAGATAGGGCGTAAAGTTTTTGATGGAATGGTAAAAACTGATGAAGTCTCGTGGAACACAATGTTGATGGGGTATGCCGCAAATGGACATGGAATTGAAGCATTGACACTCTTTAGCGAAATGAGGTACTGTGGTGTCAAGCCTTCTGCCATTACTTTTACTGGAGTTCTTTCAGCCTGTGATCATTGTGGTCTGGTTGAAGAAGGAAGATATCTGTTCCACACAATGAAACATAACTATAATATAAATCCCGGCATTGAACATTACTCTTGCATGGTTGATCTTTTTGCTCGAGCTGGATGCTTCGAGGAAGCAATGGATCTTATGGCAGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTGTCAGTATTGAGAGGCTGTATTGCTCATGGAAATAAGATTATTGGCAAGACGGTGGCAGAGCAAATCATTCAGCTTGATCCTGAAAATTCAGGTGCTTATATACAATTATCTAACATACTTGCATCTTCCGGGGATTGGGAAGGGTCAGCACTAGTAAGAGAACTGATGAGAGACAAGCATGTTCCGAAAATTCCTGGTTGCAGTTGGGCAGATTGTTAA 2082 0.4419 MYHATLQYKESEYNGMELHGLARTLQSWSTISEGRQLHVAFLKTGILNYSITVANRLLQLYTRCGFLRDASHLFDEMPSTNSFSWNTLVQAHLNSGHTHNALNLFNVMPHKTHFSWNMVVSSFAKSGRLQLAYSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNSDPAQIMYRDAFVLATVLGACADLLALNCGKQVHARVFVDGLGLDLDRVLCSSLINLYGKCGDLDGAARVISSVREVDEFSLSALISGYANAGRMREARRVFDIKVDPCVVLWNSIISGYVSNGEEMEAVNLFSAMLRNGVRGDVSTVANILSAGSGLLVVELVRQMHAYGFKAGATHDIVVASALLDAYSKCQSPCEACKLFSELKAYDTILLNTMISVYSNCGRIEDAKWIFNTMPRKTLISWNSILVGLTQNACPSEALDVFCQMNKLDLKMDKFSFASVISACASKSSLELGEQVFGKAVTIGLDSDQIISTSLVDFYCKCGFVKIGRKVFDGMVKTDEVSWNTMLMGYAANGHGIEALTLFSEMRYCGVKPSAITFTGVLSACDHCGLVEEGRYLFHTMKHNYNINPGIEHYSCMVDLFARAGCFEEAMDLMAEMPFQADANMWLSVLRGCIAHGNKIIGKTVAEQIIQLDPENSGAYIQLSNILASSGDWEGSALVRELMRDKHVPKIPGCSWADC* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00985 693 Pfam PPR repeat 587 611 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 386 411 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 146 171 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 83 109 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 114 143 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 252 274 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 414 442 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 55 78 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 221 243 IPR002885 -
Phac9g00985 693 Pfam PPR repeat 487 511 IPR002885 -
Phac9g00985 693 Pfam E motif 630 690 IPR046848 -
Phac9g00985 693 Pfam PPR repeat family 513 559 IPR002885 -
Phac9g00985 693 Pfam PPR repeat family 279 322 IPR002885 -
Phac9g00985 693 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 108 IPR046960 GO:0003723|GO:0009451
Phac9g00985 693 Gene3D Tetratricopeptide repeat domain 558 685 IPR011990 GO:0005515
Phac9g00985 693 Gene3D Tetratricopeptide repeat domain 464 557 IPR011990 GO:0005515
Phac9g00985 693 Gene3D Tetratricopeptide repeat domain 16 110 IPR011990 GO:0005515
Phac9g00985 693 Gene3D Tetratricopeptide repeat domain 326 463 IPR011990 GO:0005515
Phac9g00985 693 FunFam Pentatricopeptide repeat-containing protein chloroplastic 567 691 - -
Phac9g00985 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Phac9g00985 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Phac9g00985 693 Gene3D Tetratricopeptide repeat domain 111 175 IPR011990 GO:0005515
Phac9g00985 693 FunFam Pentatricopeptide repeat-containing protein 428 566 - -
Phac9g00985 693 NCBIfam pentatricopeptide repeat 114 144 IPR002885 -
Phac9g00985 693 NCBIfam pentatricopeptide repeat 252 274 IPR002885 -
Phac9g00985 693 NCBIfam pentatricopeptide repeat 146 170 IPR002885 -
Phac9g00985 693 NCBIfam pentatricopeptide repeat 588 611 IPR002885 -
Phac9g00985 693 NCBIfam pentatricopeptide repeat 515 548 IPR002885 -
Phac9g00985 693 NCBIfam pentatricopeptide repeat 282 315 IPR002885 -
Phac9g00985 693 NCBIfam pentatricopeptide repeat 414 447 IPR002885 -
Phac9g00985 693 Gene3D Tetratricopeptide repeat domain 176 325 IPR011990 GO:0005515
Phac9g00985 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Phac9g00985 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00985 Phac-Chr9 7530111 7532891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00985 34 692 Glycoside Hydrolase AT3G49170 29.420 4.91e-97 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00985 - - pvu:PHAVU_009G132600g 1370.91