Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00281 ATGGAGGACGATAAAATAGTTGGATATGTTACCGCGTACCTGAAGAAGAAAGGTTTCACACAAACCGAGAAGATTTTCCAGGAAGAGTTTCAGCACAACAAAACCACCAATTCATCTTCCAGTAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGAGTGGTCCCGCTAGGTTCCACGACGGCTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATCCACTGTTTTATGGACCTTGTGGCGAAAGGACACGTTCAGGAAGCTCGGAATTTCTTCAATACTTTCCGTGAAGACCACGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTACCCATCTGGAGGAAATGGAATTCGCTCACTCTCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTACGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATAAATGAGCATATTAACTTTCAAGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCTGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCGGATAAATCAAAAAGAAATTCATTGGGGGTTACTTGAAGACTCTCTTGAAGAACGGCTGGAAAAGGCAGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCATTTGAAGGGGGAAAGCAAGGTGGTGGTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGTAATGCAACTGGAAAGAGTGCAAAACCTGAAGCTAATACTGTACCTGCAGCTCCTCGAGTTAAGCCTGAACTCCCCTTACCCATAATCCCAACTGAGGTGGAACAGTCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTCAGCAGTGTTGCATTGCCGTCAGTTAGCTTTTACACATTTATAAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTAATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACCGCCTGTCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACCAAATGATCAAATGTTTGGGCAAGGTGTTGGGAAAAGACAGTATACACTGTTTCAAGGTCATTCAGGACCGGTTTATGCAGCCTCTTTTAGTCCTGTGGGAGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACCAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTTTATGATCAAGCAGGGTTCTGTGAAGTCTGTTTTGAATAGGGGAAATTATCTTTTATTCTCTTCTGAAGTCATAATAGTTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTTGTTGGTCATAGGGGTATGA 1731 0.4379 MEDDKIVGYVTAYLKKKGFTQTEKIFQEEFQHNKTTNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSFEGGKQGGGSVKKVKKDKGGNATGKSAKPEANTVPAAPRVKPELPLPIIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQPPVSSLSQGENDTSPNDQMFGQGVGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDFMIKQGSVKSVLNRGNYLLFSSEVIIVVCNGMPTATTLQLVPVTKQFDYGMCRVVSVSGFLLVIGV* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00281 576 Pfam WD domain, G-beta repeat 415 450 IPR001680 GO:0005515
Phac9g00281 576 Pfam WD domain, G-beta repeat 457 492 IPR001680 GO:0005515
Phac9g00281 576 Pfam WD domain, G-beta repeat 350 380 IPR001680 GO:0005515
Phac9g00281 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 460 494 - -
Phac9g00281 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515
Phac9g00281 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 381 IPR001680 GO:0005515
Phac9g00281 576 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Phac9g00281 576 MobiDBLite consensus disorder prediction 277 291 - -
Phac9g00281 576 MobiDBLite consensus disorder prediction 244 309 - -
Phac9g00281 576 MobiDBLite consensus disorder prediction 244 270 - -
Phac9g00281 576 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 510 - -
Phac9g00281 576 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 189 IPR007582 -
Phac9g00281 576 SUPERFAMILY WD40 repeat-like 342 509 IPR036322 GO:0005515
Phac9g00281 576 SMART WD40_4 411 450 IPR001680 GO:0005515
Phac9g00281 576 SMART WD40_4 341 380 IPR001680 GO:0005515
Phac9g00281 576 SMART WD40_4 453 492 IPR001680 GO:0005515
Phac9g00281 576 Gene3D TFIID subunit TAF5, NTD2 domain 45 194 IPR037264 -
Phac9g00281 576 PRINTS G protein beta WD-40 repeat signature 479 493 IPR020472 -
Phac9g00281 576 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Phac9g00281 576 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Phac9g00281 576 CDD TAF5_NTD2 63 195 IPR007582 -
Phac9g00281 576 Gene3D - 331 521 IPR015943 GO:0005515
Phac9g00281 576 SUPERFAMILY Taf5 N-terminal domain-like 51 194 IPR037264 -
Phac9g00281 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 501 IPR001680 GO:0005515
Phac9g00281 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00281 Phac-Chr9 1800024 1809617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00281 409 512 Miscellaneous Gene Families AT5G08390 26.667 1.21e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00281 K03130 - gmx:100805953 938.332