Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00038 ATGCTATCGTTTCACTCATGTGGATGTTGCCGCGTTTCAACATCCACAGCGTTCCATTCCCAATTCCGAACCTCACCTTCCTCACTCTTTCTCTATGCTAGGAGCCATAATTTTCGTTCTACCGTAGCGAGCGCTTGCTCTGGTTTCACCGGCGACTCAGACTCCGACGGAGAGAGAAAATTGAACTTCTCCGGTGTGCGGTTGGAGGAGGCTGTCGATAGCAGAATAGGATCTGCAAAACTAAGACTCGATAGTTGGATCTCTTCCCGCATTAACGGCATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTTCATGTAAACGGTCGTGTCGTTGATAAGGCTTCTTTCAACGTCAAAGCTGGGGATCAGATCAAATGCACAATCGCAGAGTTGCAGAAGTTGAGGGCTGTGCCAGAAAATATACCCTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCTCCTGGAAATACGTCAGGGACGCTTGTCAATGGCATTCTGCACCATTGCAATCTTCCAAATGTTGAATTTTCTAAAGAGGAAGGTCTTTCAGATACAGAAGATTGTGATGATGAGGTCAATAGCTATGGCTCCCTGGCCAGTTCTTGTGAAGGATCACATTCTAGACCGTCTATGTCATCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGGTTACTCGTTGTTGCAAAGGATGAGCATTCACATATGAAATTATCAGAGCAATTTAAGCAACGCACCATCAAGAGGGTTTATGTTAGTCTTACTGCGGGGGTACCCAGTCCAATTTCTGGGCGAGTTGATGTTCCAGTTGGCCGTGATCTTAATAACCGGTTACGTATGACTGCTGTAGCTGGACCAGTTAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATCGAGATACTTGCTGGGGGAAGTTGCTCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCTAAGTATTTGGGAGTACCTTTACTCGGTGATGAGGTGTATGGAGGGACAAAAAGCATGGTCTTGTCGTTGCTAAGGCCCCGAACTCCCATCAGTTTGCATGGCAAAATTGTACAAATGGTTTCTAGTCTAGATAGGCCTTGCCTTCATGCTTTGACACTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGCGAACCCCCTGTAGACTTCGATGAGATTTTGAGCCAGCTTCGTCAAATTGGTAGTGAGAGCGTTTCTTTCTCAAAGCCTTCAAATTTATGA 1344 0.4598 MLSFHSCGCCRVSTSTAFHSQFRTSPSSLFLYARSHNFRSTVASACSGFTGDSDSDGERKLNFSGVRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPSPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRQIGSESVSFSKPSNL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00038 447 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 85 430 - -
Phac9g00038 447 SUPERFAMILY Pseudouridine synthase 141 432 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac9g00038 447 Pfam RNA pseudouridylate synthase 155 350 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac9g00038 447 CDD S4 82 160 - -
Phac9g00038 447 Gene3D Pseudouridine synthase 138 420 - -
Phac9g00038 447 ProSitePatterns Rlu family of pseudouridine synthase signature. 236 250 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac9g00038 447 Gene3D - 69 137 IPR036986 GO:0003723
Phac9g00038 447 SUPERFAMILY Alpha-L RNA-binding motif 80 168 - -
Phac9g00038 447 ProSiteProfiles S4 RNA-binding domain profile. 81 154 - -
Phac9g00038 447 SMART s4_6 81 146 IPR002942 GO:0003723
Phac9g00038 447 CDD PseudoU_synth_RluA_like 156 405 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phac9g00038 447 Pfam S4 domain 82 128 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00038 Phac-Chr9 289802 298452 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00038 K06180 - gmx:100810383 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g00038 9 289802 298452 Phac9g00038 9 289802 298452 ECH