Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00035 ATGGCTTTGATCAAATCATGCGCACGCTTGCGCCACTCTCTTTCACCGCTCCTACCCCGCACTTTCAACCAACACTGTTCTTCAGATTCACTTCCCGAACCTCTTCTCCAACCCGATCCAAATGACACATGCCAAACTCCAAACCTATCCCCCGAGGAAACCGCCTTAGCCGACAAACTCCACGCCGCCATCAAAGATCACCACCGCAGAAACCCCACACCAAACCCTAACGCCGCTCCCCCCGCTCCCAACCTTGCCATCCCCGACCTCTCCCTTGACTTCTCCGCGCTCTCCGCCGCTCAAACACTCTCCCCCGCCGTCGCCCGCCGCGTCATCGAAAAATGCGGCACTGTCCGCCATGGCATCCCCTTATTCCAATCCCTCGCGTTCTTCAATTGGGCTACCTCACTTGACGGATTTCCCCCCTCGCCGGAGCCCTACGACGAGATGCTCGACCTCGCCGGAAAGCTGAGACATTTCGACCTCGCGTGGCACGTCATCGACCTCATGAAGACTCGCGGCGTCGAAATCAGCGTTCACACGTTCTCCGCTCTCGTCCGCCGCTACGTGAGGGCCGGATTACCTGCGGAGGCGGTGCACGCTTTTAACCGTATGGAGGACTATGGCTGCACCCCCGATAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAATGAGGCTCAATCGTTTTTTGAGAGTCTCAAGCATAAGTTTAAGCCTGATGTTTTAGTATACACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTAACATATCTAAGGCTGAAGAGGTGTTTAGTGATATGAAGATGGCTGGGATTAAGCCTAATGTTTATACTTACAGCATTGTGATTGATTCGTTGTGCCGATGCGGGCAAATTACGCGTGCTCATGATGTTTTCGCCGAGATGATCGATTCAGGGTGTGATCCTAATGCTGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGGAGGACTGAGAAGGTATTGCAGGTTCACAATCAGATGAAGAGGCTTGGTTGTCCTGCAGATACCATCAGCTACAATTTCATCATTGAGAGTCATTGTAGGGATGAGAATCTTGATGAGGCTGTGAAGATTCTCAATTTGATGGTCAAGAAAGGGGTTGCTCCTAATGCGTCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAATTGCATGATGTGAATGGTGCGCACAGGATGTATGCTAGAATGAAGGAGCTCAAGTGCCAGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCGAAATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGATGAGAATCAGGTTGAGCCTAATGTAAACACTTACCGGATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTGGTGAAGGAAATGGTTGAAGAAAAATGCCTAAGACCGAATCTTTCCGTTTATGAAACTGTTCTGGAGCTGCTCAGAAACGCTGGACAGTTGAAAAAGCATGAAGAGTTGGTGGATAAGATGGTCGCGAGGGGATTCGTCACTCGCCCTTTGTAG 1593 0.4852 MALIKSCARLRHSLSPLLPRTFNQHCSSDSLPEPLLQPDPNDTCQTPNLSPEETALADKLHAAIKDHHRRNPTPNPNAAPPAPNLAIPDLSLDFSALSAAQTLSPAVARRVIEKCGTVRHGIPLFQSLAFFNWATSLDGFPPSPEPYDEMLDLAGKLRHFDLAWHVIDLMKTRGVEISVHTFSALVRRYVRAGLPAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRRANEAQSFFESLKHKFKPDVLVYTSLVYGWCRAGNISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMIDSGCDPNAVTFNSLMRVHVKAGRTEKVLQVHNQMKRLGCPADTISYNFIIESHCRDENLDEAVKILNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESKSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLVKEMVEEKCLRPNLSVYETVLELLRNAGQLKKHEELVDKMVARGFVTRPL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00035 530 Pfam PPR repeat 319 349 IPR002885 -
Phac9g00035 530 PANTHER OS03G0856100 PROTEIN 127 217 - -
Phac9g00035 530 SUPERFAMILY TPR-like 216 427 IPR011990 GO:0005515
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Phac9g00035 530 Pfam PPR repeat family 178 226 IPR002885 -
Phac9g00035 530 Pfam PPR repeat family 352 397 IPR002885 -
Phac9g00035 530 Pfam PPR repeat family 421 469 IPR002885 -
Phac9g00035 530 Pfam PPR repeat family 246 295 IPR002885 -
Phac9g00035 530 Gene3D Tetratricopeptide repeat domain 313 402 IPR011990 GO:0005515
Phac9g00035 530 Gene3D Tetratricopeptide repeat domain 403 528 IPR011990 GO:0005515
Phac9g00035 530 Gene3D Tetratricopeptide repeat domain 113 241 IPR011990 GO:0005515
Phac9g00035 530 Gene3D Tetratricopeptide repeat domain 242 312 IPR011990 GO:0005515
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Phac9g00035 530 NCBIfam pentatricopeptide repeat 460 492 IPR002885 -
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 243 IPR002885 -
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Phac9g00035 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00035 Phac-Chr9 278689 280868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00035 137 525 Glycosyltransferase AT1G05670 25.641 7.55e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00035 - - gmx:100800850 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g00035 9 278689 280868 Phac9g00035 9 278689 280868 ECH