Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02406 ATGTCCCTATCCTACCCGCATTTCAATTATCAGGACCCACATAGTGCAAAAGAATACACCACCAACCTTAGTCACCAGCTCTCACTCTCACTCACCCACCCTCCATCGCCAACACATATAAACCAACCTCTATACATACAATTCCCGTTGCGAGAGAGAAAACAAAGTGTCGCTTCGTATCGCGTCGCAATGGCCATGGCTCTTCGCAGACTTTCCTCCACCATCAACAAACCGTTCTCCAACGCCACTTCCGTTTATCGCACTTTCTCTTCGCTCTCCGCTCACGAAAAGGACAAATCTCGAGCCGATTGGACAAAGCAGCTCAATGATCCTCTCGAGGCTGTGGATCCCGAGATCGCTGACATAATTGAACTCGAGAAAGCGCGCCAATGGAAGGGATTCGAACTTATTCCTTCCGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACAAATAAATACAGCGAAGGATATCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAGAAGCGTGCCCTTGAAGCTTTTCGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCCGGATCTCCTTCTAACTTTCAAGTTTACACTGCTTTATTGAAACCTCATGAAAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTATCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGACAACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGACTATGCACGTGTGCGCAAGGTATGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATATCGTAACAACTACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTTTACAGGAAGGGTGTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCGCACAATCACACTATTGCAGGCTTAGCTGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAGAGCAAGTACTTAACAACTGCTCAGCATTTGCACAGACTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAACTTAAGAAACAAGGGCATTGATGGTTCCAGGGTTGAGAAGGTACTCGAAGCAGTTCACATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTATCTGCTATGGTTCCTGGAGGCATTCGGATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTTAAGAAAGTAGCTGAATACTTTGATGCAGCTGTGAAGTTAGCCTTACAAATTAAGGAAAATACCAATGGTACAAAGTTGAAGGATTTTGTAGCAGCCATGCATTCAGATGAACAAATTCAGTCTAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGAGATAGAGACAATGAAGTATGGTAAGTGA 1725 0.4354 MSLSYPHFNYQDPHSAKEYTTNLSHQLSLSLTHPPSPTHINQPLYIQFPLRERKQSVASYRVAMAMALRRLSSTINKPFSNATSVYRTFSSLSAHEKDKSRADWTKQLNDPLEAVDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNETTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADIVTTTTHKSLRGPRGAMIFYRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQAMTPEFKNYQEQVLNNCSAFAQTLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMHSDEQIQSKIANLRHEVEDYAKQFPTIGFEIETMKYGK* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02406 574 CDD SHMT 115 536 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Phac8g02406 574 Hamap Serine hydroxymethyltransferase [glyA]. 111 564 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Phac8g02406 574 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 335 351 IPR019798 GO:0030170
Phac8g02406 574 Gene3D Aspartate Aminotransferase, domain 1 116 561 IPR015422 GO:0003824
Phac8g02406 574 FunFam Serine hydroxymethyltransferase 141 414 - -
Phac8g02406 574 Pfam Serine hydroxymethyltransferase 112 509 IPR039429 -
Phac8g02406 574 FunFam Serine hydroxymethyltransferase 402 562 - -
Phac8g02406 574 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 97 566 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Phac8g02406 574 Coils Coil 539 559 - -
Phac8g02406 574 Gene3D - 141 414 IPR015421 GO:0003824
Phac8g02406 574 SUPERFAMILY PLP-dependent transferases 100 565 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02406 Phac-Chr8 33515039 33522613 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02406 K00600 - gmx:100816213 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g02406 8 33515039 33522613 Phac8g02406 8 33515039 33522613 ECH