Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02249 ATGTCAGGAGGAGGATGCAGCATAGTGTGGTTTAGGAGAGATCTGAGGGTAGAGGATAACCCGGCACTGGCTGCAGGAGTGCGAGCAGGAGCTGTGATTGCTGTTTTCATATGGGCTCCAGAAGAAGAGGGTCAATACTACCCAGGTAGGGTCTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCCCTAATCACCAAGCGCTCCACTAATAGTGTTTCTTCTCTATTGGAGGTCATTAAGTCAACTGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACCGAGCAAAGGAGGTTCTGACTGCTCAAGGCATTACCGTACGTTCATTCAACTCAGACTTATTGTATGAACCATGGGATGTGAATGATGCTCAAGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAGAGAATTATTCCAGGTGATGCTTCAAGGTGCCCTTGTGATACATTGGTGTTAGAAGACGAATTAGAGAAGGCAAGCAATGCGCTTCTTTCTCGAGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTGACAGCATTCGTAAATGGTCCTCTGATTGAATACTCAAAGAATCGTAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCTCCACATTTGCACTTTGGTGAGGTGAGTGTAAAGAAAGTGTTCCATCTTGTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGGAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCAAGGTATATCAGTTTCAACCACCCCTACAGTCATGAGAGGCCCCTTCTAGGCCACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTCAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCAAGTTTCTTTGTGAAGGTGCTGCAGCTTCCCTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCCCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGCGAATTTGATCGAATAGATAATCCACAGTTTGAGGGGTATAAATGTGACCCAAATGGAGAATATGTTCGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTGAATGGATACACCATCCGTGGAATGCACCAGAGTATGTACTGCAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTTCCCATTGTGGGAATAGATGCTGCAAAAGTTAGATTACAAGAAGCACTTATACAAACGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATTGAAAATGGAACCGAGGAAGGGCTTGGAGACTCATCTGAATCAGCCCCTATTGCTTTTCCCCAAGACACACTCATGGAAGAAAGGCCTGCTGAACCTGTTAGGAACAACCCACCTCATGGTACTCGGCGCTATGAGGATCAGATGGTCCCAAGTATGACTTCTTCCCATGTGAGAGTGGAAGAGGAAGAAACATCTTCAGACCTTCGAAATTCAGCAGCAGACAACAGAGCCGAAGTTCCTACAAATGTGACCACACAACAAAATGCAAGAGAGACAGTGAATCAAGGAGAGCTGCTGAATGTAAATAGAAACACTCGAGTACAGAATAATGCTACAATGTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAATTAGTACTAGGAGAGAAAGAGATGGGGGTGTAGTTCCAGTTTGGTCTCCCCCAGCATCTAACTTCTCAGAACAATATGCAGATGATGAAAATGGTATTGGAGCCAGTTCATCTTACTTGCAGAGGCAGCATCCTCAGTCTCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGTGA 2049 0.4602 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAQGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDASRCPCDTLVLEDELEKASNALLSRAWSPGWSNADKALTAFVNGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQTWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDTLMEERPAEPVRNNPPHGTRRYEDQMVPSMTSSHVRVEEEETSSDLRNSAADNRAEVPTNVTTQQNARETVNQGELLNVNRNTRVQNNATMWLRNAAEDSTAESSISTRRERDGGVVPVWSPPASNFSEQYADDENGIGASSSYLQRQHPQSHQLMNWTRLPQTG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02249 682 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Phac8g02249 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Phac8g02249 682 MobiDBLite consensus disorder prediction 516 599 - -
Phac8g02249 682 FunFam Cryptochrome 1 8 149 - -
Phac8g02249 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Phac8g02249 682 MobiDBLite consensus disorder prediction 565 599 - -
Phac8g02249 682 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Phac8g02249 682 Gene3D HUPs 8 206 IPR014729 -
Phac8g02249 682 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Phac8g02249 682 MobiDBLite consensus disorder prediction 522 536 - -
Phac8g02249 682 MobiDBLite consensus disorder prediction 640 682 - -
Phac8g02249 682 Pfam DNA photolyase 7 163 IPR006050 -
Phac8g02249 682 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Phac8g02249 682 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Phac8g02249 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Phac8g02249 682 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Phac8g02249 682 Gene3D - 134 293 - -
Phac8g02249 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Phac8g02249 682 MobiDBLite consensus disorder prediction 612 682 - -
Phac8g02249 682 Pfam Blue/Ultraviolet sensing protein C terminal 510 626 IPR020978 -
Phac8g02249 682 PRINTS DNA photolyase signature 352 370 IPR002081 -
Phac8g02249 682 PRINTS DNA photolyase signature 143 159 IPR002081 -
Phac8g02249 682 PRINTS DNA photolyase signature 332 348 IPR002081 -
Phac8g02249 682 PRINTS DNA photolyase signature 391 405 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02249 Phac-Chr8 30539066 30545213 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02249 K12118 - gmx:100815428 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g02249 8 30539066 30545213 Phac8g02249 8 30539066 30545213 ECH