Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02229 ATGAGAAACGAAGAGGTTGGAGCTTGGTTGAATGGGTTTCCTAACCTTCACCATGCCAACGTTACGCCACAACCTTCCACTGCTCCCACCAACGCCTTTCCGATGTGGGCCGAAAACAACATGATCAACCACGACCATGATGTTGATGTCTTCCTGTCTAATGATTTTGCTAGAATGGGTGTTTTTGGTGAACAAGGGAATGGCGCTAACAAAACCAGAGGATATGGCCATGGACATGGACATAGATATGGTGTTGATGTTATGGACTCATCCTACACACATGCATTCCCACCCTCACACCCGTACTCACACCAATACTCACACTCAAACTCACACTCACTCTCACACACACCTCGTAGTTCTTTGGATGGATATGCACATGTTGGTGAAGAAAGGGGTGCCCTGTCGTCTGCTTGGGGTATGAAGCCTTCTTCTGATGTGAAGGGACACAGTTTTGGAACCCCAATGGAATTTAACCAAAGGAGGAACACTTGTTATAGAAACCTTCAAAGGCAGAACCCGTTTCATGCTAGAGGGCCATTTGCAATGGATTGGGATATTAGGAGTCCCTTTATGCTCCCTCAAAGTTACCCCTCGATGCAGCAATCCAAGCTTACTACGAATGTGAACAATCCATCGCCTCATTTCTTCCCTGCAGTGAAAGAAAGAGCACCAACAAGGGTGGTCGTAGCCCCCAGTGGTGAATTTTCCCATTATAGAGGGGACCCTGTGGCCTTTCAGTGTGATGGTGGGTTTAACATGCAAGAGAAGGATGTAAAATGGTGTGTTGGAGGTAAAGGGTGCAAGTCTTTGAGGGCTTACAGAGGAAGTTTACCTTCGCCAGCTCAAGCAGTGCCAGATGAAGTTCCTCAATTCATTCCTTCTCGCGTTCCTACTAGGCATGAAAATAATGGCATTCTTGCAAGTGATGTTTCTGTTTCTCCGCGGCCATTGTTGTTCAATTTTGGTCCTTTGGTTAAGTTCCAAGGTTACATTTATCACCTGGCAAAGGATCAGAACGGTTGTCGCTTCCTACAGAGGATGGTTGATGAGGGCACCTCTGAAGATGCACAAATAGTGTTTAAAGGAGTTATAGATGATGTTGTTGAGCTTATGATGGACCCTTTTGGGATTTACCTCGTGCAAAAGCTGATTGATGTGTGTGCTGAAGATGAAAGATTTCAGATTGTGTCAATGTTGACTAGAGAACCAGGGCAACTACTCAAAACCTCTTTCAATACCCACGGAACTCGGGTGGTTCAGAAATTGATTGCGACTGTCAACTCTAGAAATCAAATTGCATTGCTGAGGTCTGCCATTCAACCTGATTTTCTTGATCTTATTAAGGATCTCAACGGAAATCATGTTATACAACGTTGCTTGCAGTACTTTAGTTGTAAAGATAATGAGTTTATCTTTGACGCTGCTACAAATTTCTGTATTGACATAGCTACTCATGAACATGGATGTTGTGTACTACAACGTTGCATTGATTACTCCACCGGAAAGTACCAAGATAAGCTGATACAGGAAATATGTAGACATGGGCTTATTCTTGCTCAAGATCCATTTGGAAATTACGTTGTTCAATATATTATAGAGATGGAGATCCCAAGTATCTCATCCACGCTGCATTTCCAGTTCAAAGGGAACTACGTTAACCTTTCCATGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTCATGCATATTGCAGAGAGCAGGTCCGGAATAGTCCAAGAAATGTTATCTTTTCCTCACTTTGAGCGGTTGCTACCAGACCCATTTGCCAACTACGTTGTTCAACGTGCTCTTGGAGTGACCAAGGGTTCTCTGCATACATCTCTAGTGGAAGCAGTTCGACCCCACAAAATCTTGCGCACCAACCCTTATTGCAAAAGGATTTTCTCAAGGAACATACTTAATAAGTGA 1935 0.4367 MRNEEVGAWLNGFPNLHHANVTPQPSTAPTNAFPMWAENNMINHDHDVDVFLSNDFARMGVFGEQGNGANKTRGYGHGHGHRYGVDVMDSSYTHAFPPSHPYSHQYSHSNSHSLSHTPRSSLDGYAHVGEERGALSSAWGMKPSSDVKGHSFGTPMEFNQRRNTCYRNLQRQNPFHARGPFAMDWDIRSPFMLPQSYPSMQQSKLTTNVNNPSPHFFPAVKERAPTRVVVAPSGEFSHYRGDPVAFQCDGGFNMQEKDVKWCVGGKGCKSLRAYRGSLPSPAQAVPDEVPQFIPSRVPTRHENNGILASDVSVSPRPLLFNFGPLVKFQGYIYHLAKDQNGCRFLQRMVDEGTSEDAQIVFKGVIDDVVELMMDPFGIYLVQKLIDVCAEDERFQIVSMLTREPGQLLKTSFNTHGTRVVQKLIATVNSRNQIALLRSAIQPDFLDLIKDLNGNHVIQRCLQYFSCKDNEFIFDAATNFCIDIATHEHGCCVLQRCIDYSTGKYQDKLIQEICRHGLILAQDPFGNYVVQYIIEMEIPSISSTLHFQFKGNYVNLSMQKFSSHVVEKCLMHIAESRSGIVQEMLSFPHFERLLPDPFANYVVQRALGVTKGSLHTSLVEAVRPHKILRTNPYCKRIFSRNILNK* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02229 644 ProSiteProfiles Pumilio RNA-binding repeat profile. 439 474 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 584 619 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 439 474 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 363 398 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 511 545 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 475 510 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 547 581 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 402 437 IPR001313 GO:0003723
Phac8g02229 644 SMART pum_5 327 362 IPR001313 GO:0003723
Phac8g02229 644 Gene3D - 322 641 IPR011989 -
Phac8g02229 644 MobiDBLite consensus disorder prediction 99 124 - -
Phac8g02229 644 FunFam Pumilio homolog 9 320 644 - -
Phac8g02229 644 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 61 639 - -
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 519 534 IPR001313 GO:0003723
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 444 474 IPR001313 GO:0003723
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 595 606 IPR001313 GO:0003723
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 551 572 IPR001313 GO:0003723
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 368 400 IPR001313 GO:0003723
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 480 513 IPR001313 GO:0003723
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 412 434 IPR001313 GO:0003723
Phac8g02229 644 Pfam Pumilio-family RNA binding repeat 332 362 IPR001313 GO:0003723
Phac8g02229 644 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 302 644 IPR033133 GO:0003723
Phac8g02229 644 ProSiteProfiles Pumilio RNA-binding repeat profile. 327 362 IPR001313 GO:0003723
Phac8g02229 644 ProSiteProfiles Pumilio RNA-binding repeat profile. 399 437 IPR001313 GO:0003723
Phac8g02229 644 CDD Pumilio 330 639 IPR033712 GO:0003723
Phac8g02229 644 MobiDBLite consensus disorder prediction 99 120 - -
Phac8g02229 644 ProSiteProfiles Pumilio RNA-binding repeat profile. 363 398 IPR001313 GO:0003723
Phac8g02229 644 ProSiteProfiles Pumilio RNA-binding repeat profile. 582 619 IPR001313 GO:0003723
Phac8g02229 644 ProSiteProfiles Pumilio RNA-binding repeat profile. 475 510 IPR001313 GO:0003723
Phac8g02229 644 SUPERFAMILY ARM repeat 327 638 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02229 Phac-Chr8 30312056 30316649 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02229 - - pvu:PHAVU_008G173000g 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g02229 8 30312056 30316649 Phac8g02229 8 30312056 30316649 ECH