LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g02103	ATGAGAACCGTGGTTGAAGGATCCTTGGTCGAGAGGTCTGACGACGCTGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAACCCTTCCTCCACTTCAGCATCTGAAGTGAACGAGGCCCAGGGCATGTTGCCAGATTCAGGGAAAATTGAAACACCTACCCATGCATCCACATCCTTGGAGGGTTCACTGAAGCAGGTCAATGTGGGTTCTCCTAATGAGCAAGGATTATCCAATGCATTTAATGTCGCTTTTACATCAATGCCCCCCATGCATATCAATGAGCAAGTGGAATCTTGTGATTTGCGAATTGTGCCTGTCTATGGTGGAGGAGTTAATTCTAAATCATTTTCTGAGTCCGCTGGTTGCAGAGGGTCGGCGGGAATTAATAAAAACAAGGACTCAGTCCCTTGTGGTCCAATTCGGATTTGTGGCCAGAAAAGTTATTTTAGTCCACACTTGTCTTTAGAGGCCGTTGAGAAGGCATTAGAGAAGGGCGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATCGAGTTGAGGCCTACTGCAAAATTGATGGAGTGCCAACTGACGTTCTGATTAATGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCCTTGCCATTGTGGACAAAAATGAAAGGGCCAAATGGGTCTTGTAACAACACTTCAACACCGGAAGGTTGCAACCTTTTTACAGAAGATAATGAAGGGGAAAGTAAAGGGAAACATAAGGTAGATGCTGATCATGGGTCTGCCCATTACAGAAGCTATCCTGTTCAAAACAAGGAGGATGCTGTTCAAAACTCCATATCCTATAGAAATGATTCTTTGACTGGAAAAAGAATTGTCTGCGAGGATAATACCTCCCAGGTTTCTACTAACCATTTAGATCTACTTGGAATAGCCAACCGGGACAGCATTAATGGACATCACTATGCTACTCCTGATTCCTTAAGGAACAATTCTTGTAGTGGACAAAGTGAAGTAGTTAATGCTGTGGAAAAGATGTGTTTGTTGGTTAATTCTGTCCCTTCTAAAAGACCAACTGGCAGGGTGGTCTCTATAATTGAGAGATCGCCTCGTCGGGAGGGTATTGTCGGTCATCTTAATGTGAAGCAGTGGGCTTCTTACAAGGACATAACAAAAAAGGACGTCAAGAAGAATAATAATTTGGTTTCTGATAATGATTACATCCAGATGATACCAACTGATCCAAAGTTTCCTAATATGATGCTTCTTGTTAGAAAATTACCCAAGTGCATTATGCAAAGGTTGAAAAGTGGTGACATGACAATTGAAAAGGATCTGGTAGCTGCACAAATTGTTGGTTGGGTTGAGGAAAATCCTTTTCCCGAGGCTCACATCTTGTGTGTTTTTGGAAAAGGTGATGAAATTCAGACCCAATTAGATGCAATTTTGTTTCAGAATGCAATCTGTTCGTCTGAATTTTCTCCTGAAGCTCTGTCCTGTCTGCCGTGTGTTCCTTGGGAGGTACCACTGAAGGAAATTCAGAGTAGAATAGATCTCAGAAATTTGTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCACTGTCAATTGAGAAGTTACCTAATGGAAATTATAGAGTAGGTGTTCACATTGCTGATGTATCATATTTTGTTTTACCTAACACAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACATCTGTCTATATGTTGCAAAGGAAGTTACCTATGTTGCCTGCATTATTATCAGAGAATATTGGTTCACTTAGTCCTGGAGTGGATCGACTTGCTGTTTCTATACTCCTGGATGTAAATCATGTGGGGGATGTCGTAGACCGTTGGATTGGTCGTTCTGTTATACACTCATGTTGTAAGCTTTCATATGACCATGCTCAGGACATCATTGACCAGGATTTTGATTTTGAAGGTTTAAACAATACTGAAGATGGCTATCCCAGAGTGTACGGCAACTTTGAATGGGCTGATGTTATTATGTCTTTGAAGAGTCTTTATGAAATTTCGAATGTCTTGAAACGCAAGAGGTTTACTGATGGGGCTCTACGGCTCGAAAACCCAAAAGTTGTTATCTTGTTTGATGAAAATGGAGTTCCTTATGATAGTATGCTTTCTGAAAGGAAAGATTCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATAGAGTTGCTGCTGAAGTCATATGCAGAGCTTATCCTGATGCTGCATTGTTAAGGAGGCATCCTGAACCTAATATGCGAAAGCTGAGAGAGTTTATGGCATTTTGTCAGAAGCATGGTTTTGAATTGAACACCACTTCCTCTGGTCAATTCCATTGGTCACTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACTACATACTTATTTCTTATGCTACTCGGCCAATGCAGTTGGCTTCTTACTTCTGTAGTGGAGATTTAAAAGATAGTGAAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTTACGTCACCTCTGCGTCGGTATCCGGATATTATTGTTCACCGGACATTACTTGCTACCATAGAGGCTGAGGATTTGTATGCGAAGCAGGTTTATAAGGAAATAGATGTGGAGAAAAGATGTTTCACAGGTATCAATTTTGATAAGAGTGCTGCAGCATCCATCAAAGGCAGGGAAGCACTATCAGTTGCAGCTGTGAAGTATATTGTTCCAGGTGCTGAAACACTTGCAAAAATTGCTGCTCATTGCAACGAGAGAAAGCTAGCTAGCAGAAATGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTAAAGAAAAAGGAGGTCTTATTTTCAGAAGCTAGAATTCTGGGACTAGGCCCGAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTTGAAGGCTTGACTGCAGAATGGCTTGAAACAACATCCACATTGGTGCTTAGCATGTCTACTAATACGTGTACATTTAGGAGGGGCTGGTCTAACAAGTGGAGGGCGATTGAAGAAGTTGCACTGCTTTCTTGTCCGTATAACCAGAGTGATGTAATAAAAGTGGATGGTAATAAAGCGGAAACTGAAATTGATCCATCAGTTTTTCCTCTCACAGTGCAAGTTCTTTCAACAATTCCAGTGGCTCTTCATGCTGTTGGTGGTGAGGATGGGCCCCTTGATATTGGAGTAAGGCTGTATATGAGCTCCTATTTTTATGGGATCAAGTGTTGA	3324	0.4134	MRTVVEGSLVERSDDAEKEKKKKRRSNRRSKQNPSSTSASEVNEAQGMLPDSGKIETPTHASTSLEGSLKQVNVGSPNEQGLSNAFNVAFTSMPPMHINEQVESCDLRIVPVYGGGVNSKSFSESAGCRGSAGINKNKDSVPCGPIRICGQKSYFSPHLSLEAVEKALEKGDVFKALFHVNAHNRVEAYCKIDGVPTDVLINGIPAQNRAVEGDIVAVKIDPLPLWTKMKGPNGSCNNTSTPEGCNLFTEDNEGESKGKHKVDADHGSAHYRSYPVQNKEDAVQNSISYRNDSLTGKRIVCEDNTSQVSTNHLDLLGIANRDSINGHHYATPDSLRNNSCSGQSEVVNAVEKMCLLVNSVPSKRPTGRVVSIIERSPRREGIVGHLNVKQWASYKDITKKDVKKNNNLVSDNDYIQMIPTDPKFPNMMLLVRKLPKCIMQRLKSGDMTIEKDLVAAQIVGWVEENPFPEAHILCVFGKGDEIQTQLDAILFQNAICSSEFSPEALSCLPCVPWEVPLKEIQSRIDLRNLCIFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVLPNTALDSEAQSRSTSVYMLQRKLPMLPALLSENIGSLSPGVDRLAVSILLDVNHVGDVVDRWIGRSVIHSCCKLSYDHAQDIIDQDFDFEGLNNTEDGYPRVYGNFEWADVIMSLKSLYEISNVLKRKRFTDGALRLENPKVVILFDENGVPYDSMLSERKDSNFLVEEYMLLANRVAAEVICRAYPDAALLRRHPEPNMRKLREFMAFCQKHGFELNTTSSGQFHWSLEQIREKLKGDPVLYYILISYATRPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYAKQVYKEIDVEKRCFTGINFDKSAAASIKGREALSVAAVKYIVPGAETLAKIAAHCNERKLASRNVKDACDKLYIWFLLKKKEVLFSEARILGLGPRFMSIYIQKLAIERRIYYDDVEGLTAEWLETTSTLVLSMSTNTCTFRRGWSNKWRAIEEVALLSCPYNQSDVIKVDGNKAETEIDPSVFPLTVQVLSTIPVALHAVGGEDGPLDIGVRLYMSSYFYGIKC*	1108

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g02103	1107	Hamap	DIS3-like exonuclease 2 [DIS3L2].	18	1078	IPR028591	GO:0000175\|GO:0034427
	Phac8g02103	1107	SMART	RNB_2	523	877	IPR001900	GO:0003723\|GO:0004540
	Phac8g02103	1107	Pfam	Dis3-like cold-shock domain 2 (CSD2)	414	493	IPR041505	-
	Phac8g02103	1107	Coils	Coil	13	33	-	-
	Phac8g02103	1107	PANTHER	RIBONUCLEASE	21	1100	-	-
	Phac8g02103	1107	MobiDBLite	consensus disorder prediction	1	66	-	-
	Phac8g02103	1107	Gene3D	-	398	480	-	-
	Phac8g02103	1107	MobiDBLite	consensus disorder prediction	7	21	-	-
	Phac8g02103	1107	MobiDBLite	consensus disorder prediction	31	45	-	-
	Phac8g02103	1107	SUPERFAMILY	Nucleic acid-binding proteins	366	495	IPR012340	-
	Phac8g02103	1107	FunFam	DIS3-like exonuclease 2	145	247	-	-
	Phac8g02103	1107	Pfam	RNB domain	523	875	IPR001900	GO:0003723\|GO:0004540
	Phac8g02103	1107	SUPERFAMILY	Nucleic acid-binding proteins	484	962	IPR012340	-
	Phac8g02103	1107	SUPERFAMILY	Nucleic acid-binding proteins	152	375	IPR012340	-
	Phac8g02103	1107	ProSitePatterns	Ribonuclease II family signature.	844	868	IPR022966	-
	Phac8g02103	1107	Gene3D	-	149	243	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g02103	Phac-Chr8	28104663	28111195	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g02103	K18758		-	gmx:100817387	1790.78

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phac8g02103	8	28104663	28111195	Phac8g02103	8	28104663	28111195	ECH