Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00546 ATGAGTAACGAGTTGGAGGGGTATGAGCGTAAATACTGCCAGCTTTCAGCAAAACTATCAAAAGCATGCATTGAAGCTTCTGCTACTCATGGAGAGCTAAAGAAACAAAAAGTTTCAGAAATAAAGGAGGGAATTGAGGAGGCAGAAGCTTTGATTCGAAAAATGGACCTTGTGGCAAGAAGTTTCCAGTCAGATTTTAAGGCTGTGGTTCTTGCTAAGGTGAGGGAGTACAAAGCAGATCTGAACCACATTAAAAGAGAAGTGAAGAAAATTGTATCTGGTGTGTTAAACCCTTCTGCACGGGATGAGTTGTTAGAATCGAACATGACAAATGTTATGAAGGCATCAACTGATCACAGAGAAAGATTAATGACATCAACAGAAAGGTTGAACAGGTCTAGTGACGGAATTAAGGACAGTAGAAGAACAATGTTGGAAACAGAAGATGTGGGCGTTATGATTCTTCAAGATCTGCATTCCCAGAGACAATCTCTGCTGCATGCACATCACACGCTTCATGGAGTGGATGATAACATAGGCAAGAGCAAGAAAATTTTGTCTAACATATCAACAAGGATGAACAGGAACAAGTGTATTATCAGCACCGTTGTTGTGGTCCTGATAGTTGTTATCACCTTGATTCTGTACTTCAAGCTTTCTTAG 663 0.4027 MSNELEGYERKYCQLSAKLSKACIEASATHGELKKQKVSEIKEGIEEAEALIRKMDLVARSFQSDFKAVVLAKVREYKADLNHIKREVKKIVSGVLNPSARDELLESNMTNVMKASTDHRERLMTSTERLNRSSDGIKDSRRTMLETEDVGVMILQDLHSQRQSLLHAHHTLHGVDDNIGKSKKILSNISTRMNRNKCIISTVVVVLIVVITLILYFKLS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00546 220 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 4 216 - -
Phac8g00546 220 PIRSF Membrin-2 6 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Phac8g00546 220 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
Phac8g00546 220 Gene3D - 117 197 - -
Phac8g00546 220 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 98 - -
Phac8g00546 220 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Phac8g00546 220 SUPERFAMILY SNARE fusion complex 130 189 - -
Phac8g00546 220 CDD SNARE_Vti1 127 188 - -
Phac8g00546 220 FunFam Vesicle transport through interaction with t-SNAREsB 117 197 - -
Phac8g00546 220 SUPERFAMILY t-snare proteins 6 93 IPR010989 GO:0016020|GO:0016192
Phac8g00546 220 Gene3D - 1 95 IPR038407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00546 Phac-Chr8 3447926 3451099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00546 K08493 - gmx:100816145 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g00546 8 3447926 3451099 Phac8g00546 8 3447926 3451099 ECH