Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01060 ATGAATTCAATAACCCTTTTCCTTTTAGGTCCAAAGATGGTCCACAAATTTTCCCATTCTTTGATTATTTTGCGGAGATTATGTAGCCATCCGTTTGATGGTGATGGATTTGAATGCATTGATGAGCCTTTGAAAAAACTAGGATTAAATTGTGATTCTACTGTGGATGTAACGCTCCCTTTAAACGAGGATTGGGGTTATAACCAAAAGCAGTTTTCACTCAGAAAAGGGTTCTTAGAAAATGTGAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGACGGTCCCGGTCTTGATGCGAGGTTGGTTTTGGGTGAGTTGCATGTAAAGCCATCAGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGATCATAAATTCTGAGAATAAAACTAGGTGTGCAAAGCTGGCATACAAGTTTTTTGTGTGGTGTAGTCAGCAAGAGGGTTACCGGCACACTGCGAATGCATATCACTTAGTTATGAATATATATGCGGAGTGTGAGGAATTTAAGGCATTGTGGAGATTGGTTGATGAAATGATTGAGAAAGGGCTTCCTGCTACGGCTCGAACTTTCAATATCTTGATTCGTACTTGTGGTGAGGCAGGATTGGCTAAGAAATTGGTGGAGAGGTTCATAAAATCGAAGACGTTTAACTTTAGGCCTTTTAAGCACTCCTACAATGCAATCCTACATGGTCTTCTTGTTTTAAAGCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTTGATGGATTTTCTTCAGATATTTTAACTTACAATATTGTCATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAATTCCAAAGACTGTTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACCTTCAATATTCTTCTTCATGTTCTTGGCAAAGGGGACAAACCGCTTGCAGCTCTCAATCTCTTAAATCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGAAATCTGGATGCTTGCAAGTATTTTTTTGATGAAATGATAAAGAATGGATGTATCCCAGATGTGGTGGCTTACACTGTAATGATAACAGGGTATGTAGTGGCTGGTGAGCTTGAGAAAGCCCTCGAAATGTATCAAGATATGATTTCTAGAGAACAAGTTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTATGCATGGCAGGAAAATTTGATGAAGCTTGTTCAATGCTCAAGGAAATGGAAACCAAAGGTTGTAGTCCAAACTCGGTTGTCTATGATTCTTTAGTGAGTAGTTTACGGAATGCTGGAAAGACTGCTAATGCTCATGAAGTGATAAGACAGATGACAGAGAAGAGGAAGTATACCCACATATATTCAAGATACGAAGGGTACAAATGA 1446 0.3928 MNSITLFLLGPKMVHKFSHSLIILRRLCSHPFDGDGFECIDEPLKKLGLNCDSTVDVTLPLNEDWGYNQKQFSLRKGFLENVKLDAKRVLEVLRQDGPGLDARLVLGELHVKPSGLLVREVLFGILKIINSENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLVMNIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFKHSYNAILHGLLVLKQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFQRLFDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGELEKALEMYQDMISREQVPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYDSLVSSLRNAGKTANAHEVIRQMTEKRKYTHIYSRYEGYK* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01060 481 Gene3D Tetratricopeptide repeat domain 249 396 IPR011990 GO:0005515
Phac7g01060 481 Pfam Pentatricopeptide repeat domain 425 468 IPR002885 -
Phac7g01060 481 Gene3D Tetratricopeptide repeat domain 397 469 IPR011990 GO:0005515
Phac7g01060 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Phac7g01060 481 Pfam PPR repeat family 262 308 IPR002885 -
Phac7g01060 481 Pfam PPR repeat family 366 414 IPR002885 -
Phac7g01060 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Phac7g01060 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Phac7g01060 481 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 296 468 - -
Phac7g01060 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Phac7g01060 481 Gene3D Tetratricopeptide repeat domain 116 240 IPR011990 GO:0005515
Phac7g01060 481 Pfam PPR repeat 327 359 IPR002885 -
Phac7g01060 481 NCBIfam pentatricopeptide repeat 369 403 IPR002885 -
Phac7g01060 481 NCBIfam pentatricopeptide repeat 299 332 IPR002885 -
Phac7g01060 481 NCBIfam pentatricopeptide repeat 404 438 IPR002885 -
Phac7g01060 481 NCBIfam pentatricopeptide repeat 336 368 IPR002885 -
Phac7g01060 481 SUPERFAMILY HCP-like 231 427 - -
Phac7g01060 481 Pfam PPR repeat 230 259 IPR002885 -
Phac7g01060 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Phac7g01060 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01060 Phac-Chr7 6634103 6638642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01060 183 477 Miscellaneous Gene Families AT4G11690 28.716 1.11e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01060 - - gmx:100792512 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g01060 7 6634103 6638642 Phac7g01060 7 6634103 6638642 ECH