Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02670 ATGATTCTTCGCAGAATCGCAGCCGCGAGCAGGTCATACTACACGAGCAGGACAAATAAACCGAACCTGTACTCGAAAATCAGCCCCCTTGGAAATCCCAACACCAGTGTGGTACCGGTACTCGACGATTGGGTGTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCAACGCATCATTCGTGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCCCTCCAGGTATCTGAGTGGATGTACATGAATGGTGTGTGCATATTCTCTCCAACGGAACATGCGGTGCATTTGGATCTGATTGGCAATGTTCAAGGATTCTCTGCTGCAGAAAGCTATTTTGATGCCTTGAGGGATGAAGACAAAACCCATAAGACCTACGGAGCTCTCTTGAATTGCTATGCTCGCCAGCGTGAAACTGACAAGGCCCTCTCTCATTTTCTGAAAATGAAGGAGTTGGGATTTGCTTCGTCTCCTCTAACCTACAATGTCATTATGTGTCTGTACTCAAAGATTGGACAGCACGAGAAGGTTCCTGATGTGCTAAGTGAGATGAAAAAGAACCAGGTCATGCCTGACAATTTCAGCTACAGGATCTGTATAAATTCTTATGGTGTGAGGTCCGATTTTGGTGGAGTGGAAAGAGTGTTGAAAGAAATGGAGACTCAACCACACATTGTGATGGACTGGAACACTTACTCTATCGTGGCCAATTTTTATATAAAAGCTGGGTTTAGAAGAGAGGCAGTTTCTGCCCTAAAGAAATCTGAGGAGAAGCTAGGTAACAAAGATGGCCAGGGTCACAATCATCTCATCTCTCTGTATGCCCAACTTGAACTGAAGAATGAGGTCATGAGAATATGGGATCTGGAGAAAAGTGATTGCAAGAGGTGCATAAACAGGGATTTCACAACCATGTTAGAATCCCTTGTAAAGCTTGGGGCGTTCGATGAAGCTGAGAAAATACTTATGGAATGGGAATCCTCTGGCAATTGTTATGATTTTGGAATCCCTAGTATTGTAATCATTGGGTATGCACAAAAAAGTTTGTATGAGAAGGCCGAGGCCATCCTCCTAGAGTTACAAAATAAGGAAAAGCTCACAACCCCAAACTGTTGGTCGATGGTGGCAGGTGGATATCTTCACAAGGGTGAGACGGAGAAAGCATTGAGGTGCTTTAAAACTGCCCTTTCTATGTACGTGGAAAATAAAGGATGGAAGCCGAACGCAAAGGTGGTTGCAGAACTATTAAGTTGGATTGCTGATAACAGCAGTATTGAAGATGCAGAAGATTTCATCAGATTATTAAGAAATGCCATCCCAGTGAATAGACAAGTATATCATACCCTAATCAAGACTTATGTGCGAGGTGGTAAAGAAGTGGATAAGCTTCTGGACCACATGGAGAAAGATGGCATCGTCAAAAACAAAGAAACTAAGAAAATAATCAACATCAGGAATGCATGA 1461 0.436 MILRRIAAASRSYYTSRTNKPNLYSKISPLGNPNTSVVPVLDDWVYKGNKVRVAELQRIIRDLRKRSRFSQALQVSEWMYMNGVCIFSPTEHAVHLDLIGNVQGFSAAESYFDALRDEDKTHKTYGALLNCYARQRETDKALSHFLKMKELGFASSPLTYNVIMCLYSKIGQHEKVPDVLSEMKKNQVMPDNFSYRICINSYGVRSDFGGVERVLKEMETQPHIVMDWNTYSIVANFYIKAGFRREAVSALKKSEEKLGNKDGQGHNHLISLYAQLELKNEVMRIWDLEKSDCKRCINRDFTTMLESLVKLGAFDEAEKILMEWESSGNCYDFGIPSIVIIGYAQKSLYEKAEAILLELQNKEKLTTPNCWSMVAGGYLHKGETEKALRCFKTALSMYVENKGWKPNAKVVAELLSWIADNSSIEDAEDFIRLLRNAIPVNRQVYHTLIKTYVRGGKEVDKLLDHMEKDGIVKNKETKKIINIRNA* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02670 486 Pfam PPR repeat family 159 202 IPR002885 -
Phac6g02670 486 Gene3D Tetratricopeptide repeat domain 291 396 IPR011990 GO:0005515
Phac6g02670 486 Gene3D Tetratricopeptide repeat domain 397 482 IPR011990 GO:0005515
Phac6g02670 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Phac6g02670 486 PANTHER OS12G0527900 PROTEIN 18 469 - -
Phac6g02670 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Phac6g02670 486 Gene3D Tetratricopeptide repeat domain 52 290 IPR011990 GO:0005515
Phac6g02670 486 FunFam Pentatricopeptide repeat-containing protein mitochondrial 53 264 - -
Phac6g02670 486 SUPERFAMILY TPR-like 307 402 IPR011990 GO:0005515
Phac6g02670 486 Pfam PPR repeat 338 361 IPR002885 -
Phac6g02670 486 Pfam PPR repeat 124 153 IPR002885 -
Phac6g02670 486 Pfam PPR repeat 301 328 IPR002885 -
Phac6g02670 486 NCBIfam pentatricopeptide repeat 124 153 IPR002885 -
Phac6g02670 486 NCBIfam pentatricopeptide repeat 159 191 IPR002885 -
Phac6g02670 486 SUPERFAMILY TPR-like 107 397 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02670 Phac-Chr6 24423733 24426715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02670 23 449 EF-hand Containing Proteins AT1G02150 31.075 5.08e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02670 - - gmx:100805658 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02670 6 24423733 24426715 Phac6g02670 6 24423733 24426715 ECH