Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00671 ATGGTGACAGAGGAACAAATATCGGAAGCGGTATCGTCGCTGCTGCGCGAATCGAACCCTAGCCAGCGTAGCTTCACGACGCTGAACCAGGTGGTGGAGGAGCTTCAGGCCAAGCTCGGCCACGACCTCTCACACAAGCTCGATTTCATCACCGCGCAGATCAACCTCCTGTTCGGATCCCAACCACAACCACCACAACCTCCGCCGCAAAATGCGCAGAGGCAGATACAACAGCCGAAAGACCATTTTGCCCCTCCACCAAACCCTAATTTCCACTCTGTTCCTGTCAGTTCCGGCTTCCAGGCTCCCAAATTGCCTTCTTCTAACGCTGTCGTCGCCACTGCTGCTGATATTTCGCGTGCTGAAGCTCCTGCTCCTGTTCCTACTCCTGCTCCTGTTAACGATCCTCCGAAGGAAAGTACTCAAACAAAGGCGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAACTTTGTGGTGTATCGCCTGAACTTCAAGTCATTGTTGGCCAGCCAGCACTGTCGAGGACTGAGATTGTCAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTTCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGAAGAGCTGCGTGTGGTGTTTGAGACTGATTGTACTGATATGTTCAAGATGAACAAGTTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAAAAGCAGAAGGTAGATGTGGACTCAGGAAAAAGAATTGCTGAACCTACTCCTTCTGTAATAATATCTGATGCACTCGCTAACTTTTTTGGCATTACTGAAAGGGAGATGCTACAGTCTGAGGTTCTGAGACGTATCTGGGAGTACATAAAAGTCAACCAGCTAGAGGATCCTATGAATCCTATGGCAATACTGTGTGATGCGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGA 1011 0.4807 MVTEEQISEAVSSLLRESNPSQRSFTTLNQVVEELQAKLGHDLSHKLDFITAQINLLFGSQPQPPQPPPQNAQRQIQQPKDHFAPPPNPNFHSVPVSSGFQAPKLPSSNAVVATAADISRAEAPAPVPTPAPVNDPPKESTQTKAKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNEELRVVFETDCTDMFKMNKLLAKHIIPLEPTKKPVPKKQKVDVDSGKRIAEPTPSVIISDALANFFGITEREMLQSEVLRRIWEYIKVNQLEDPMNPMAILCDAKLQEIFGCESISALGIPEVLGRHHIFRSS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00671 336 Gene3D SWIB/MDM2 domain 149 237 IPR036885 -
Phac6g00671 336 Gene3D SWIB/MDM2 domain 253 336 IPR036885 -
Phac6g00671 336 CDD SWIB-MDM2_like 259 330 - -
Phac6g00671 336 SMART swib_2 255 336 IPR019835 -
Phac6g00671 336 SMART swib_2 154 233 IPR019835 -
Phac6g00671 336 MobiDBLite consensus disorder prediction 58 102 - -
Phac6g00671 336 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 240 330 - -
Phac6g00671 336 CDD SWIB-MDM2_like 158 228 - -
Phac6g00671 336 SUPERFAMILY SWIB/MDM2 domain 254 331 IPR036885 -
Phac6g00671 336 ProSiteProfiles SWIB/MDM2 domain profile. 153 230 IPR003121 -
Phac6g00671 336 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 59 IPR014876 -
Phac6g00671 336 MobiDBLite consensus disorder prediction 122 156 - -
Phac6g00671 336 ProSiteProfiles SWIB/MDM2 domain profile. 254 333 IPR003121 -
Phac6g00671 336 Pfam DEK C terminal domain 2 58 IPR014876 -
Phac6g00671 336 Gene3D - 1 58 - -
Phac6g00671 336 SUPERFAMILY SWIB/MDM2 domain 147 233 IPR036885 -
Phac6g00671 336 Pfam SWIB/MDM2 domain 158 228 IPR003121 -
Phac6g00671 336 Pfam SWIB/MDM2 domain 260 330 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00671 Phac-Chr6 11529082 11533297 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phac6g00671 SWIB 3.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00671 - - gmx:100801960 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g00671 6 11529082 11533297 Phac6g00671 6 11529082 11533297 ECH