Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01204 ATGAATCGGTTGCTGAAAGCGGCCAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGTTCCCTCACAGAAATACCTGACGAGGTTTACCGGAATCTGGAGGGGCTCGGTGGCGGCGGCGACGACAAGTGGTGGGAGGCTGTGGAGCTTCAGAAGCTTATTCTTGCTCACAATAGCATTGGATGGTTAAAGGAAGATCTGAAAAATTTGCCTTTTCTTGCTGTGCTGAATCTCAGCCACAACTGTCTCTCGCAGCTTCCCGCAGCTATAGGAGAGTTGCCTCAGTTGAAGATGTTGGATGTTTCGTTCAATTCGATAATTGAAATACCGGAGGAGATTGGATCGGCTGCATCGCTTGTTAAGCTTGATTGTTCAAATAATAGGCTCACGGAGCTTCCAAGCTCGCTTGGCAGATGCTTAGAATTGTTGGACTTAAAGGGATCAAACAATCTTCTTACAAGCTTGCCAGAAGATTTAGCAAATTGTTCTAAATTGTCTAAGCTAGATATGGAGGGAAACAAGCTAACAGTGATATCAGAAAATCTCATTTCATCATGGACCATGCTTACCGAATTCAATGCATCAAAAAATTTGCTGACTGGGTTACCAGTCAGCATTGGAGGCCTTTCACGTCTAATTCGTCTTGACCTTCATCAAAATAGAATATCGGCAATCCCTTCATCAATCAATGGTTGTCATTCACTTACAGAGCTTTATTTGGGGAATAACAATATTTCTACCGTACCAGTGGAGATAGCAGCCCTTACTCGACTTGGAACTTTAGTTCTTCACTCTAACCAGCTGAAGGACTATCCAGTAGAGGCATGCAAATTGAGTCTTTTAGTTTTAGATCTTTCTAATAATTCATTGAGCGGGTTGCCCCCTGAAATGGGAAAGATGACTACATTGAGAAAACTTCTGCTTAGTGGAAATCCTTTGAGAACTCTTCGAAGCTCATTAGTATCTGGACCTACACCAGCGTTACTGAAATTTCTACGAAGCAGACTCTCTACAGATGAAGATTCTGAAACTGTAACCACATCAAAAGAAGAAGTGATCGCAATGGCTACCCGATTGTCTATCACTTCAAAGGAACTTTCTATGGAAGGGTTGGGATTAACTGCTGTCCCATCAGAAGTGTGGGAATCAGGGGAGGTCATAAAACTTGATCTTTCAAGAAACTCCATCCAGGAGTTGCCTGTTCAACTTTCTTCTTGTGTTTCACTCCAGACATTGATTTTATCTAAGAATCAAATTATAGAGTGGCCAAGTTCAATTCTTAAATCACTTTCAAGCCTTTCATGTTTGAAGATAGACAACAATTCCCTCAGACAGATTCCTTCAGATGGCTTTGAAGTGGTGCCTAAGCTTCAGATCCTGGATTTAAGCGGTAATGCAGCTTCATTACTAGATGGTCCTGCATTTTCTAGCTTGCCTTACCTGCAAGAGCTTTACCTAAGAAGGATGAGGCTCAGTGAAGTTCCATCTGATATAGTGGGGCTGCATCAGCTACGGGTCCTTGACTTGAGTCAGAATTCCCTTCAATCAATTCCAGTGGGGTTAAAGAATCTAACTTCTCTCGAGGAGCTTGACTTATCTGATAACAACATCTCAGTTCTTCCACCTGAGCTGGGTTTGCTGGAACCAAGCCTACAGGCGTTGAGACTTGATGGGAATCCTCTCAGAAGCATTCGAAGGACTGTCTTGTCTAAAGGAACTAAAGCTGTTCTGAACTATTTGAAGGACAAATTGCCAGAGTAG 1758 0.4289 MNRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGGDDKWWEAVELQKLILAHNSIGWLKEDLKNLPFLAVLNLSHNCLSQLPAAIGELPQLKMLDVSFNSIIEIPEEIGSAASLVKLDCSNNRLTELPSSLGRCLELLDLKGSNNLLTSLPEDLANCSKLSKLDMEGNKLTVISENLISSWTMLTEFNASKNLLTGLPVSIGGLSRLIRLDLHQNRISAIPSSINGCHSLTELYLGNNNISTVPVEIAALTRLGTLVLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTLRKLLLSGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSETVTTSKEEVIAMATRLSITSKELSMEGLGLTAVPSEVWESGEVIKLDLSRNSIQELPVQLSSCVSLQTLILSKNQIIEWPSSILKSLSSLSCLKIDNNSLRQIPSDGFEVVPKLQILDLSGNAASLLDGPAFSSLPYLQELYLRRMRLSEVPSDIVGLHQLRVLDLSQNSLQSIPVGLKNLTSLEELDLSDNNISVLPPELGLLEPSLQALRLDGNPLRSIRRTVLSKGTKAVLNYLKDKLPE* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01204 585 Gene3D Ribonuclease Inhibitor 275 330 IPR032675 -
Phac5g01204 585 PANTHER - 147 365 - -
Phac5g01204 585 Pfam Leucine rich repeat 480 536 IPR001611 GO:0005515
Phac5g01204 585 Pfam Leucine rich repeat 210 267 IPR001611 GO:0005515
Phac5g01204 585 Pfam Leucine rich repeat 48 105 IPR001611 GO:0005515
Phac5g01204 585 Pfam Leucine Rich Repeat 279 294 IPR001611 GO:0005515
Phac5g01204 585 SUPERFAMILY L domain-like 44 317 - -
Phac5g01204 585 PRINTS Leucine-rich repeat signature 523 536 - -
Phac5g01204 585 PRINTS Leucine-rich repeat signature 279 292 - -
Phac5g01204 585 ProSiteProfiles Leucine-rich repeat profile. 278 299 IPR001611 GO:0005515
Phac5g01204 585 SUPERFAMILY L domain-like 363 564 - -
Phac5g01204 585 Pfam BspA type Leucine rich repeat region (6 copies) 136 197 IPR026906 -
Phac5g01204 585 SMART LRR_typ_2 92 115 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 116 138 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 477 499 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 208 231 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 161 184 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 278 298 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 523 546 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 406 428 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 548 570 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 453 476 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 232 253 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 500 522 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 429 452 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 254 277 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 383 405 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 299 322 IPR003591 -
Phac5g01204 585 SMART LRR_typ_2 69 90 IPR003591 -
Phac5g01204 585 FunFam Leucine-rich repeat-containing protein 40 474 582 - -
Phac5g01204 585 Gene3D Ribonuclease Inhibitor 178 274 IPR032675 -
Phac5g01204 585 Gene3D Ribonuclease Inhibitor 469 582 IPR032675 -
Phac5g01204 585 SMART LRR_sd22_2 161 183 - -
Phac5g01204 585 SMART LRR_sd22_2 523 538 - -
Phac5g01204 585 SMART LRR_sd22_2 208 230 - -
Phac5g01204 585 SMART LRR_sd22_2 405 434 - -
Phac5g01204 585 SMART LRR_sd22_2 231 253 - -
Phac5g01204 585 SMART LRR_sd22_2 500 522 - -
Phac5g01204 585 SMART LRR_sd22_2 92 110 - -
Phac5g01204 585 Gene3D Ribonuclease Inhibitor 1 177 IPR032675 -
Phac5g01204 585 ProSiteProfiles Leucine-rich repeat profile. 502 524 IPR001611 GO:0005515
Phac5g01204 585 Gene3D Ribonuclease Inhibitor 331 468 IPR032675 -
Phac5g01204 585 SMART LRR_bac_2 92 111 - -
Phac5g01204 585 SMART LRR_bac_2 276 296 - -
Phac5g01204 585 SMART LRR_bac_2 115 134 - -
Phac5g01204 585 SMART LRR_bac_2 429 448 - -
Phac5g01204 585 SMART LRR_bac_2 523 543 - -
Phac5g01204 585 SMART LRR_bac_2 382 401 - -
Phac5g01204 585 SMART LRR_bac_2 231 250 - -
Phac5g01204 585 SMART LRR_bac_2 500 519 - -
Phac5g01204 585 SMART LRR_bac_2 69 88 - -
Phac5g01204 585 SMART LRR_bac_2 138 157 - -
Phac5g01204 585 SMART LRR_bac_2 161 180 - -
Phac5g01204 585 SMART LRR_bac_2 188 204 - -
Phac5g01204 585 ProSiteProfiles Leucine-rich repeat profile. 525 546 IPR001611 GO:0005515
Phac5g01204 585 ProSiteProfiles Leucine-rich repeat profile. 233 255 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01204 Phac-Chr5 18056644 18065454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01204 51 543 Receptor kinase-like Gene Family AT4G08850 28.986 7.33e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01204 - - gmx:100788118 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01204 5 18056644 18065454 Phac5g01204 5 18056644 18065454 ECH